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clpP clpP rbcL rbcL accD accD psaI psaI cemA cemA psbJ psbJ psaJ psaJ rpl33 rpl33 rps18 rps18 rpl20 rpl20 psbB psbB petB petB petD petD rpoA rpoA rps11 rps11 rpl36 rpl36 rps8 rps8 rpl14 rpl14 rpl16-2 rpl16-2 rps19-2 rps19-2 ndhB ndhB rpl32 rpl32 ccsA ccsA ndhD ndhD ndhA ndhA ycf1 ycf1 ycf2 ycf2 rpl2 rpl2 rps12-2 rps12-2 rpl2-2 rpl2-2 RPL8 RPL8 infA infA rps19 rps19 rpl16 rpl16 rps12 rps12 matK matK rps16 rps16 psbK psbK psbI psbI atpA atpA atpF atpF rps2 rps2 rpoC2 rpoC2 rpoC1 rpoC1 rpoB rpoB petN petN psaB psaB psaA psaA ycf3 ycf3 ndhC ndhC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
clpPATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. (196 aa)
rbcLRibulose bisphosphate carboxylase large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. (477 aa)
accDAcetyl-coenzyme A carboxylase carboxyl transferase subunit beta; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA. (512 aa)
psaIPhotosystem I reaction center subunit VIII; May help in the organization of the PsaL subunit. Belongs to the PsaI family. (36 aa)
cemAEnvelope membrane protein; May be involved in proton extrusion. Indirectly promotes efficient inorganic carbon uptake. (229 aa)
psbJPhotosystem II reaction center protein J; One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. (40 aa)
psaJPhotosystem I reaction center subunit IX; May help in the organization of the PsaE and PsaF subunits. Belongs to the PsaJ family. (44 aa)
rpl33Ribosomal protein L33. (66 aa)
rps18Ribosomal protein S18; Belongs to the bacterial ribosomal protein bS18 family. (101 aa)
rpl2050S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (128 aa)
psbBPhotosystem II CP47 reaction center protein; One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light- induced photochemical processes of PSII. PSII is a light-driven water:plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation; Belongs to the PsbB/PsbC family. PsbB subfamily. (508 aa)
petBCytochrome b6; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. (215 aa)
petDCytochrome b6-f complex subunit 4; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. (160 aa)
rpoADNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (337 aa)
rps11Ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family. (138 aa)
rpl36Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (37 aa)
rps8Ribosomal protein S8; Belongs to the universal ribosomal protein uS8 family. (134 aa)
rpl14Ribosomal protein L14; Belongs to the universal ribosomal protein uL14 family. (122 aa)
rpl16-2Ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family. (134 aa)
rps19-2Ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family. (92 aa)
ndhBNADH-quinone oxidoreductase subunit N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family. (510 aa)
rpl32Ribosomal protein L32. (55 aa)
ccsACytochrome c biogenesis protein CcsA; Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment. (313 aa)
ndhDNAD(P)H-quinone oxidoreductase chain 4; NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4 family. (500 aa)
ndhANADH-quinone oxidoreductase subunit H; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone. (363 aa)
ycf1Protein TIC 214. (1902 aa)
ycf2Protein Ycf2; Probable ATPase of unknown function. Its presence in a non- photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis; Belongs to the Ycf2 family. (2280 aa)
rpl2Ribosomal protein L2. (274 aa)
rps12-2Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family. (123 aa)
rpl2-2Ribosomal protein L2. (331 aa)
RPL860S ribosomal protein L8. (260 aa)
infATranslation initiation factor IF-1, chloroplastic. (156 aa)
rps19Ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family. (94 aa)
rpl16Ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family. (171 aa)
rps12Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family. (125 aa)
matKMaturase K; Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns. Belongs to the intron maturase 2 family. MatK subfamily. (509 aa)
rps16Ribosomal protein S16. (85 aa)
psbKPhotosystem II reaction center protein K; One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. (61 aa)
psbIPhotosystem II reaction center protein I; One of the components of the core complex of photosystem II (PSII), required for its stability and/or assembly. PSII is a light- driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. (51 aa)
atpAATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. (507 aa)
atpFATP synthase CF0 B subunit; Belongs to the ATPase B chain family. (184 aa)
rps2Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. (236 aa)
rpoC2RNA polymerase beta'' subunit. (1388 aa)
rpoC1DNA-directed RNA polymerase subunit gamma; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the RNA polymerase beta' chain family. RpoC1 subfamily. (688 aa)
rpoBDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1070 aa)
petNCytochrome b6-f complex subunit 8; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. (29 aa)
psaBPhotosystem I P700 chlorophyll a apoprotein A2; Belongs to the PsaA/PsaB family. (734 aa)
psaAPhotosystem I P700 chlorophyll a apoprotein A1; Belongs to the PsaA/PsaB family. (750 aa)
ycf3Photosystem I assembly protein Ycf3; Essential for the assembly of the photosystem I (PSI) complex. May act as a chaperone-like factor to guide the assembly of the PSI subunits. (168 aa)
ndhCNADH-quinone oxidoreductase subunit A; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family. (120 aa)
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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