18 items (Nicotiana tabacum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	infA	Translation initiation factor IF-1, chloroplastic. (156 aa)
	rpl16	Ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family. (171 aa)
	rps12	Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family. (125 aa)
	matK	Maturase K; Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns. Belongs to the intron maturase 2 family. MatK subfamily. (509 aa)
	rps16	Ribosomal protein S16. (85 aa)
	atpF	ATP synthase CF0 B subunit; Belongs to the ATPase B chain family. (184 aa)
	rpl33	Ribosomal protein L33. (66 aa)
	rpl20	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (128 aa)
	rpl36	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (37 aa)
	rpl14	Ribosomal protein L14; Belongs to the universal ribosomal protein uL14 family. (122 aa)
	rpl16-2	Ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family. (134 aa)
	ndhF	NADH dehydrogenase subunit 5; Belongs to the complex I subunit 5 family. (740 aa)
	rpl32	Ribosomal protein L32. (55 aa)
	ycf1	Protein TIC 214. (1902 aa)
	rpl2	Ribosomal protein L2. (274 aa)
	rps12-2	Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family. (123 aa)
	rpl2-2	Ribosomal protein L2. (331 aa)
	RPL8	60S ribosomal protein L8. (260 aa)

Your Current Organism:

Nicotiana tabacum

NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RPL8	atpF	P25998	A0A140G1P8	60S ribosomal protein L8.	ATP synthase CF0 B subunit; Belongs to the ATPase B chain family.	0.978
RPL8	infA	P25998	A0A075EYP9	60S ribosomal protein L8.	Translation initiation factor IF-1, chloroplastic.	0.946
RPL8	matK	P25998	A0A140G1P3	60S ribosomal protein L8.	Maturase K; Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns. Belongs to the intron maturase 2 family. MatK subfamily.	0.772
RPL8	ndhF	P25998	A0A140G1W6	60S ribosomal protein L8.	NADH dehydrogenase subunit 5; Belongs to the complex I subunit 5 family.	0.795
RPL8	rpl14	P25998	A0A140G1V3	60S ribosomal protein L8.	Ribosomal protein L14; Belongs to the universal ribosomal protein uL14 family.	0.973
RPL8	rpl16	P25998	A0A0M3SGP4	60S ribosomal protein L8.	Ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	0.971
RPL8	rpl16-2	P25998	A0A140G1V4	60S ribosomal protein L8.	Ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	0.975
RPL8	rpl2-2	P25998	A0A1S4EUK8	60S ribosomal protein L8.	Ribosomal protein L2.	0.429
RPL8	rpl20	P25998	A0A140G1U0	60S ribosomal protein L8.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.987
RPL8	rpl32	P25998	A0A140G1W7	60S ribosomal protein L8.	Ribosomal protein L32.	0.885
RPL8	rpl33	P25998	A0A140G1T8	60S ribosomal protein L8.	Ribosomal protein L33.	0.909
RPL8	rpl36	P25998	A0A140G1V1	60S ribosomal protein L8.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.985
RPL8	rps12	P25998	A0A0M4JAF4	60S ribosomal protein L8.	Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	0.970
RPL8	rps12-2	P25998	A0A140G1Y5	60S ribosomal protein L8.	Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	0.970
RPL8	rps16	P25998	A0A140G1P4	60S ribosomal protein L8.	Ribosomal protein S16.	0.972
RPL8	ycf1	P25998	A0A140G1X7	60S ribosomal protein L8.	Protein TIC 214.	0.805
atpF	RPL8	A0A140G1P8	P25998	ATP synthase CF0 B subunit; Belongs to the ATPase B chain family.	60S ribosomal protein L8.	0.978
atpF	infA	A0A140G1P8	A0A075EYP9	ATP synthase CF0 B subunit; Belongs to the ATPase B chain family.	Translation initiation factor IF-1, chloroplastic.	0.937
atpF	matK	A0A140G1P8	A0A140G1P3	ATP synthase CF0 B subunit; Belongs to the ATPase B chain family.	Maturase K; Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns. Belongs to the intron maturase 2 family. MatK subfamily.	0.920
atpF	ndhF	A0A140G1P8	A0A140G1W6	ATP synthase CF0 B subunit; Belongs to the ATPase B chain family.	NADH dehydrogenase subunit 5; Belongs to the complex I subunit 5 family.	0.862