STRINGSTRING
LOC107795323 LOC107795323 LOC107799067 LOC107799067 LOC107799645 LOC107799645 LOC107815709 LOC107815709 LOC107816468 LOC107816468 LOC107823361 LOC107823361 LOC107824109 LOC107824109 LOC107824358 LOC107824358 rpl2-2 rpl2-2 ndhC ndhC rpoC1 rpoC1 matK matK rps16 rps16 psbA psbA rps12 rps12 infA infA LOC107762104 LOC107762104 LOC107761566 LOC107761566 LOC107759605 LOC107759605 LOC107759604 LOC107759604 LOC107759325 LOC107759325 LOC107759326 LOC107759326 rps12-2 rps12-2 ycf2 ycf2 ycf1 ycf1 ndhH ndhH rpl32 rpl32 ndhF ndhF rps7 rps7 ndhB ndhB rpl14 rpl14 rps11 rps11 rpoA rpoA psbN psbN psbB psbB clpP clpP rpl20 rpl20 rps18 rps18 psbJ psbJ cemA cemA accD accD rbcL rbcL LOC107771931 LOC107771931 LOC107790674 LOC107790674
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC107795323Thioredoxin; Belongs to the thioredoxin family. (118 aa)
LOC107799067Thioredoxin; Belongs to the thioredoxin family. (117 aa)
LOC107799645Thioredoxin; Belongs to the thioredoxin family. (136 aa)
LOC107815709Thioredoxin; Belongs to the thioredoxin family. (112 aa)
LOC107816468Thioredoxin; Belongs to the thioredoxin family. (126 aa)
LOC107823361Thioredoxin; Belongs to the thioredoxin family. (139 aa)
LOC107824109Thioredoxin; Belongs to the thioredoxin family. (135 aa)
LOC107824358Thioredoxin; Belongs to the thioredoxin family. (117 aa)
rpl2-2Ribosomal protein L2. (331 aa)
ndhCNADH-quinone oxidoreductase subunit A; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family. (120 aa)
rpoC1DNA-directed RNA polymerase subunit gamma; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the RNA polymerase beta' chain family. RpoC1 subfamily. (688 aa)
matKMaturase K; Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns. Belongs to the intron maturase 2 family. MatK subfamily. (509 aa)
rps16Ribosomal protein S16. (85 aa)
psbAPhotosystem II protein D1; Photosystem II (PSII) is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors. (353 aa)
rps12Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family. (125 aa)
infATranslation initiation factor IF-1, chloroplastic. (156 aa)
LOC107762104Thioredoxin; Belongs to the thioredoxin family. (126 aa)
LOC107761566Thioredoxin; Belongs to the thioredoxin family. (139 aa)
LOC107759605Thioredoxin; Belongs to the thioredoxin family. (136 aa)
LOC107759604Thioredoxin; Belongs to the thioredoxin family. (140 aa)
LOC107759325Thioredoxin; Belongs to the thioredoxin family. (140 aa)
LOC107759326Thioredoxin; Belongs to the thioredoxin family. (140 aa)
rps12-2Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family. (123 aa)
ycf2Protein Ycf2; Probable ATPase of unknown function. Its presence in a non- photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis; Belongs to the Ycf2 family. (2280 aa)
ycf1Protein TIC 214. (1902 aa)
ndhHNADH-quinone oxidoreductase subunit D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. (393 aa)
rpl32Ribosomal protein L32. (55 aa)
ndhFNADH dehydrogenase subunit 5; Belongs to the complex I subunit 5 family. (740 aa)
rps7Ribosomal protein S7; Belongs to the universal ribosomal protein uS7 family. (155 aa)
ndhBNADH-quinone oxidoreductase subunit N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family. (510 aa)
rpl14Ribosomal protein L14; Belongs to the universal ribosomal protein uL14 family. (122 aa)
rps11Ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family. (138 aa)
rpoADNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (337 aa)
psbNProtein PsbN; May play a role in photosystem I and II biogenesis. Belongs to the PsbN family. (43 aa)
psbBPhotosystem II CP47 reaction center protein; One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light- induced photochemical processes of PSII. PSII is a light-driven water:plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation; Belongs to the PsbB/PsbC family. PsbB subfamily. (508 aa)
clpPATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. (196 aa)
rpl2050S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (128 aa)
rps18Ribosomal protein S18; Belongs to the bacterial ribosomal protein bS18 family. (101 aa)
psbJPhotosystem II reaction center protein J; One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. (40 aa)
cemAEnvelope membrane protein; May be involved in proton extrusion. Indirectly promotes efficient inorganic carbon uptake. (229 aa)
accDAcetyl-coenzyme A carboxylase carboxyl transferase subunit beta; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA. (512 aa)
rbcLRibulose bisphosphate carboxylase large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. (477 aa)
LOC107771931Thioredoxin; Belongs to the thioredoxin family. (118 aa)
LOC107790674Thioredoxin; Belongs to the thioredoxin family. (123 aa)
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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