(19 nodes) (2023) Functional Modules in the Meristems: Tinkering in Action. network (Nicotiana tabacum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BRI1	Brassinosteroid insensitive 1; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. (1214 aa)
	LOC107778290	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (264 aa)
	LOC107779602	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (264 aa)
	LOC107796712	Protein WUSCHEL-like. (311 aa)
	LOC107807534	WUSCHEL-related homeobox 4-like. (235 aa)
	LOC107817166	Receptor protein kinase CLAVATA1-like; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. (987 aa)
	LOC107818776	MADS-box protein SOC1-like. (219 aa)
	LOC107832241	Caltractin-like isoform X1. (210 aa)
	FT4	Protein FLOWERING LOCUS T-like. (174 aa)
	PCNA	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (264 aa)
	Nt14-3-3omega3	14-3-3-like protein F; Belongs to the 14-3-3 family. (258 aa)
	Q5KTN4_TOBAC	14-3-3-like protein D; Belongs to the 14-3-3 family. (249 aa)
	Q5KTN5_TOBAC	14-3-3-like protein C; Belongs to the 14-3-3 family. (260 aa)
	kn1	Homeobox protein knotted-1-like 1. (327 aa)
	Q75ZD6_TOBAC	14-3-3-like protein 16R; Belongs to the 14-3-3 family. (258 aa)
	D75	14-3-3 protein 9-like; Belongs to the 14-3-3 family. (261 aa)
	D31	14-3-3-like protein B; Belongs to the 14-3-3 family. (255 aa)
	CEN1	Caltractin-like isoform X2. (177 aa)
	CO	Zinc finger protein CONSTANS-LIKE 2-like. (403 aa)

Your Current Organism:

Nicotiana tabacum

NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BRI1	D31	A6N8J1	Q948K4	Brassinosteroid insensitive 1; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	14-3-3-like protein B; Belongs to the 14-3-3 family.	0.459
BRI1	D75	A6N8J1	Q948K3	Brassinosteroid insensitive 1; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	14-3-3 protein 9-like; Belongs to the 14-3-3 family.	0.465
BRI1	LOC107796712	A6N8J1	A0A1S4AEE8	Brassinosteroid insensitive 1; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	Protein WUSCHEL-like.	0.523
BRI1	Nt14-3-3omega3	A6N8J1	Q549Z2	Brassinosteroid insensitive 1; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	14-3-3-like protein F; Belongs to the 14-3-3 family.	0.465
BRI1	Q5KTN4_TOBAC	A6N8J1	Q5KTN4	Brassinosteroid insensitive 1; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	14-3-3-like protein D; Belongs to the 14-3-3 family.	0.465
BRI1	Q5KTN5_TOBAC	A6N8J1	Q5KTN5	Brassinosteroid insensitive 1; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	14-3-3-like protein C; Belongs to the 14-3-3 family.	0.465
BRI1	Q75ZD6_TOBAC	A6N8J1	Q75ZD6	Brassinosteroid insensitive 1; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	14-3-3-like protein 16R; Belongs to the 14-3-3 family.	0.465
CO	FT4	V9LXL2	J9WPJ0	Zinc finger protein CONSTANS-LIKE 2-like.	Protein FLOWERING LOCUS T-like.	0.752
CO	LOC107818776	V9LXL2	A0A1S4CGQ3	Zinc finger protein CONSTANS-LIKE 2-like.	MADS-box protein SOC1-like.	0.767
D31	BRI1	Q948K4	A6N8J1	14-3-3-like protein B; Belongs to the 14-3-3 family.	Brassinosteroid insensitive 1; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	0.459
D31	FT4	Q948K4	J9WPJ0	14-3-3-like protein B; Belongs to the 14-3-3 family.	Protein FLOWERING LOCUS T-like.	0.542
D75	BRI1	Q948K3	A6N8J1	14-3-3 protein 9-like; Belongs to the 14-3-3 family.	Brassinosteroid insensitive 1; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	0.465
D75	FT4	Q948K3	J9WPJ0	14-3-3 protein 9-like; Belongs to the 14-3-3 family.	Protein FLOWERING LOCUS T-like.	0.548
FT4	CO	J9WPJ0	V9LXL2	Protein FLOWERING LOCUS T-like.	Zinc finger protein CONSTANS-LIKE 2-like.	0.752
FT4	D31	J9WPJ0	Q948K4	Protein FLOWERING LOCUS T-like.	14-3-3-like protein B; Belongs to the 14-3-3 family.	0.542
FT4	D75	J9WPJ0	Q948K3	Protein FLOWERING LOCUS T-like.	14-3-3 protein 9-like; Belongs to the 14-3-3 family.	0.548
FT4	LOC107796712	J9WPJ0	A0A1S4AEE8	Protein FLOWERING LOCUS T-like.	Protein WUSCHEL-like.	0.406
FT4	LOC107818776	J9WPJ0	A0A1S4CGQ3	Protein FLOWERING LOCUS T-like.	MADS-box protein SOC1-like.	0.768
FT4	Nt14-3-3omega3	J9WPJ0	Q549Z2	Protein FLOWERING LOCUS T-like.	14-3-3-like protein F; Belongs to the 14-3-3 family.	0.544
FT4	Q5KTN4_TOBAC	J9WPJ0	Q5KTN4	Protein FLOWERING LOCUS T-like.	14-3-3-like protein D; Belongs to the 14-3-3 family.	0.554