7 items (Periophthalmus magnuspinnatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPMGP00000002767	Dpoe2NT domain-containing protein. (92 aa)
	ENSPMGP00000002787	Polymerase (DNA directed), epsilon 2. (325 aa)
	ENSPMGP00000005307	Polymerase (DNA directed), epsilon 3 (p17 subunit). (146 aa)
	ENSPMGP00000023441	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (310 aa)
	ENSPMGP00000023442	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (328 aa)
	ENSPMGP00000027525	Polymerase (DNA-directed), epsilon 4, accessory subunit. (131 aa)
	ENSPMGP00000027527	SCY domain-containing protein. (116 aa)

Your Current Organism:

Periophthalmus magnuspinnatus

NCBI taxonomy Id: 409849
Other names: P. magnuspinnatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSPMGP00000002767	ENSPMGP00000005307	Dpoe2NT domain-containing protein.	Polymerase (DNA directed), epsilon 3 (p17 subunit).	0.991
ENSPMGP00000002767	ENSPMGP00000023441	Dpoe2NT domain-containing protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.986
ENSPMGP00000002767	ENSPMGP00000023442	Dpoe2NT domain-containing protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.986
ENSPMGP00000002767	ENSPMGP00000027525	Dpoe2NT domain-containing protein.	Polymerase (DNA-directed), epsilon 4, accessory subunit.	0.985
ENSPMGP00000002767	ENSPMGP00000027527	Dpoe2NT domain-containing protein.	SCY domain-containing protein.	0.980
ENSPMGP00000002787	ENSPMGP00000005307	Polymerase (DNA directed), epsilon 2.	Polymerase (DNA directed), epsilon 3 (p17 subunit).	0.991
ENSPMGP00000002787	ENSPMGP00000023441	Polymerase (DNA directed), epsilon 2.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.990
ENSPMGP00000002787	ENSPMGP00000023442	Polymerase (DNA directed), epsilon 2.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.990
ENSPMGP00000002787	ENSPMGP00000027525	Polymerase (DNA directed), epsilon 2.	Polymerase (DNA-directed), epsilon 4, accessory subunit.	0.985
ENSPMGP00000002787	ENSPMGP00000027527	Polymerase (DNA directed), epsilon 2.	SCY domain-containing protein.	0.980
ENSPMGP00000005307	ENSPMGP00000002767	Polymerase (DNA directed), epsilon 3 (p17 subunit).	Dpoe2NT domain-containing protein.	0.991
ENSPMGP00000005307	ENSPMGP00000002787	Polymerase (DNA directed), epsilon 3 (p17 subunit).	Polymerase (DNA directed), epsilon 2.	0.991
ENSPMGP00000005307	ENSPMGP00000023441	Polymerase (DNA directed), epsilon 3 (p17 subunit).	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.992
ENSPMGP00000005307	ENSPMGP00000023442	Polymerase (DNA directed), epsilon 3 (p17 subunit).	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.992
ENSPMGP00000005307	ENSPMGP00000027525	Polymerase (DNA directed), epsilon 3 (p17 subunit).	Polymerase (DNA-directed), epsilon 4, accessory subunit.	0.999
ENSPMGP00000005307	ENSPMGP00000027527	Polymerase (DNA directed), epsilon 3 (p17 subunit).	SCY domain-containing protein.	0.991
ENSPMGP00000023441	ENSPMGP00000002767	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Dpoe2NT domain-containing protein.	0.986
ENSPMGP00000023441	ENSPMGP00000002787	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Polymerase (DNA directed), epsilon 2.	0.990
ENSPMGP00000023441	ENSPMGP00000005307	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Polymerase (DNA directed), epsilon 3 (p17 subunit).	0.992
ENSPMGP00000023441	ENSPMGP00000023442	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.933