(19 nodes) Mixed, incl. Protein kinase 5 complex, and Microtubule associated protein 1 network (Periophthalmus magnuspinnatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPMGP00000002440	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily. (372 aa)
	ENSPMGP00000002538	Cyclin-dependent kinase 5 activator. (317 aa)
	ENSPMGP00000004654	Cyclin-dependent kinase 5 activator. (302 aa)
	ENSPMGP00000005794	Uncharacterized protein. (228 aa)
	ENSPMGP00000005797	Uncharacterized protein. (111 aa)
	ENSPMGP00000006223	Microtubule-associated protein. (280 aa)
	ENSPMGP00000006488	Fragile X mental retardation, autosomal homolog 2. (636 aa)
	ENSPMGP00000009530	Microtubule-associated protein. (284 aa)
	ENSPMGP00000013683	Uncharacterized protein. (2614 aa)
	ENSPMGP00000016314	Fragile X mental retardation 1. (471 aa)
	ENSPMGP00000017188	Fragile X mental retardation, autosomal homolog 1. (550 aa)
	ENSPMGP00000018944	Cyclin-dependent kinase 5. (272 aa)
	ENSPMGP00000020490	Cyclin-dependent kinase 5 activator. (330 aa)
	ENSPMGP00000022813	Microtubule-associated protein. (240 aa)
	ENSPMGP00000023402	Uncharacterized protein. (294 aa)
	ENSPMGP00000026300	Cyclin-dependent kinase 5, regulatory subunit 2b (p39). (286 aa)
	ENSPMGP00000026536	Microtubule-associated protein 1Sa. (983 aa)
	ENSPMGP00000027198	Microtubule-associated protein. (699 aa)
	ENSPMGP00000028534	Uncharacterized protein. (103 aa)

Your Current Organism:

Periophthalmus magnuspinnatus

NCBI taxonomy Id: 409849
Other names: P. magnuspinnatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSPMGP00000002440	ENSPMGP00000002538	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.	Cyclin-dependent kinase 5 activator.	0.577
ENSPMGP00000002440	ENSPMGP00000004654	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.	Cyclin-dependent kinase 5 activator.	0.577
ENSPMGP00000002440	ENSPMGP00000006223	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.	Microtubule-associated protein.	0.834
ENSPMGP00000002440	ENSPMGP00000009530	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.	Microtubule-associated protein.	0.834
ENSPMGP00000002440	ENSPMGP00000018944	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.	Cyclin-dependent kinase 5.	0.697
ENSPMGP00000002440	ENSPMGP00000020490	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.	Cyclin-dependent kinase 5 activator.	0.577
ENSPMGP00000002440	ENSPMGP00000022813	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.	Microtubule-associated protein.	0.747
ENSPMGP00000002440	ENSPMGP00000026300	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.	Cyclin-dependent kinase 5, regulatory subunit 2b (p39).	0.577
ENSPMGP00000002440	ENSPMGP00000027198	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.	Microtubule-associated protein.	0.747
ENSPMGP00000002440	ENSPMGP00000028534	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.747
ENSPMGP00000002538	ENSPMGP00000002440	Cyclin-dependent kinase 5 activator.	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.	0.577
ENSPMGP00000002538	ENSPMGP00000006223	Cyclin-dependent kinase 5 activator.	Microtubule-associated protein.	0.610
ENSPMGP00000002538	ENSPMGP00000009530	Cyclin-dependent kinase 5 activator.	Microtubule-associated protein.	0.610
ENSPMGP00000002538	ENSPMGP00000018944	Cyclin-dependent kinase 5 activator.	Cyclin-dependent kinase 5.	0.980
ENSPMGP00000002538	ENSPMGP00000022813	Cyclin-dependent kinase 5 activator.	Microtubule-associated protein.	0.569
ENSPMGP00000002538	ENSPMGP00000027198	Cyclin-dependent kinase 5 activator.	Microtubule-associated protein.	0.569
ENSPMGP00000002538	ENSPMGP00000028534	Cyclin-dependent kinase 5 activator.	Uncharacterized protein.	0.569
ENSPMGP00000004654	ENSPMGP00000002440	Cyclin-dependent kinase 5 activator.	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.	0.577
ENSPMGP00000004654	ENSPMGP00000006223	Cyclin-dependent kinase 5 activator.	Microtubule-associated protein.	0.610
ENSPMGP00000004654	ENSPMGP00000009530	Cyclin-dependent kinase 5 activator.	Microtubule-associated protein.	0.610