(10 nodes) U3 snoRNA binding network (Periophthalmus magnuspinnatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPMGP00000029931	Uncharacterized protein. (119 aa)
	ENSPMGP00000025610	Transducin (beta)-like 3. (823 aa)
	ENSPMGP00000025186	Protein kinase, DNA-activated, catalytic subunit; Belongs to the PI3/PI4-kinase family. (2516 aa)
	ENSPMGP00000024284	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family. (722 aa)
	ENSPMGP00000023025	Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein. (464 aa)
	ENSPMGP00000022724	DEAH (Asp-Glu-Ala-His) box polypeptide 37. (1057 aa)
	ENSPMGP00000014740	BMS1 ribosome biogenesis factor. (408 aa)
	ENSPMGP00000014731	DUF663 domain-containing protein. (387 aa)
	ENSPMGP00000014101	TSR1 ribosome maturation factor. (812 aa)
	ENSPMGP00000004878	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (129 aa)

Your Current Organism:

Periophthalmus magnuspinnatus

NCBI taxonomy Id: 409849
Other names: P. magnuspinnatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSPMGP00000004878	ENSPMGP00000014101	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	TSR1 ribosome maturation factor.	0.845
ENSPMGP00000004878	ENSPMGP00000014731	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	DUF663 domain-containing protein.	0.955
ENSPMGP00000004878	ENSPMGP00000014740	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	BMS1 ribosome biogenesis factor.	0.955
ENSPMGP00000004878	ENSPMGP00000022724	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	DEAH (Asp-Glu-Ala-His) box polypeptide 37.	0.751
ENSPMGP00000004878	ENSPMGP00000023025	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein.	0.999
ENSPMGP00000004878	ENSPMGP00000025610	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	Transducin (beta)-like 3.	0.987
ENSPMGP00000004878	ENSPMGP00000029931	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	Uncharacterized protein.	0.417
ENSPMGP00000014101	ENSPMGP00000004878	TSR1 ribosome maturation factor.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.845
ENSPMGP00000014101	ENSPMGP00000014731	TSR1 ribosome maturation factor.	DUF663 domain-containing protein.	0.940
ENSPMGP00000014101	ENSPMGP00000014740	TSR1 ribosome maturation factor.	BMS1 ribosome biogenesis factor.	0.940
ENSPMGP00000014101	ENSPMGP00000023025	TSR1 ribosome maturation factor.	Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein.	0.880
ENSPMGP00000014101	ENSPMGP00000025610	TSR1 ribosome maturation factor.	Transducin (beta)-like 3.	0.876
ENSPMGP00000014101	ENSPMGP00000029931	TSR1 ribosome maturation factor.	Uncharacterized protein.	0.937
ENSPMGP00000014731	ENSPMGP00000004878	DUF663 domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.955
ENSPMGP00000014731	ENSPMGP00000014101	DUF663 domain-containing protein.	TSR1 ribosome maturation factor.	0.940
ENSPMGP00000014731	ENSPMGP00000014740	DUF663 domain-containing protein.	BMS1 ribosome biogenesis factor.	0.932
ENSPMGP00000014731	ENSPMGP00000022724	DUF663 domain-containing protein.	DEAH (Asp-Glu-Ala-His) box polypeptide 37.	0.825
ENSPMGP00000014731	ENSPMGP00000023025	DUF663 domain-containing protein.	Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein.	0.983
ENSPMGP00000014731	ENSPMGP00000025610	DUF663 domain-containing protein.	Transducin (beta)-like 3.	0.991
ENSPMGP00000014731	ENSPMGP00000029931	DUF663 domain-containing protein.	Uncharacterized protein.	0.644