13 items (Periophthalmus magnuspinnatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPMGP00000022193	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (354 aa)
	ENSPMGP00000016159	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (116 aa)
	ENSPMGP00000013470	General transcription factor IIB. (310 aa)
	ENSPMGP00000001473	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (152 aa)
	ENSPMGP00000003161	TBP-binding domain-containing protein. (401 aa)
	ENSPMGP00000003695	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (623 aa)
	ENSPMGP00000005067	TAF domain-containing protein. (66 aa)
	ENSPMGP00000005112	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (209 aa)
	ENSPMGP00000008685	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family. (185 aa)
	ENSPMGP00000006844	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto. (920 aa)
	ENSPMGP00000026071	CBFD_NFYB_HMF domain-containing protein. (71 aa)
	ENSPMGP00000024747	Uncharacterized protein. (57 aa)
	ENSPMGP00000025903	Uncharacterized protein. (112 aa)

Your Current Organism:

Periophthalmus magnuspinnatus

NCBI taxonomy Id: 409849
Other names: P. magnuspinnatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSPMGP00000001473	ENSPMGP00000003161	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TBP-binding domain-containing protein.	0.999
ENSPMGP00000001473	ENSPMGP00000003695	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSPMGP00000001473	ENSPMGP00000005067	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF domain-containing protein.	0.990
ENSPMGP00000001473	ENSPMGP00000005112	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSPMGP00000001473	ENSPMGP00000006844	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto.	0.999
ENSPMGP00000001473	ENSPMGP00000008685	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.999
ENSPMGP00000001473	ENSPMGP00000013470	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	General transcription factor IIB.	0.976
ENSPMGP00000001473	ENSPMGP00000016159	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.945
ENSPMGP00000001473	ENSPMGP00000022193	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSPMGP00000001473	ENSPMGP00000024747	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Uncharacterized protein.	0.987
ENSPMGP00000001473	ENSPMGP00000025903	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Uncharacterized protein.	0.987
ENSPMGP00000003161	ENSPMGP00000001473	TBP-binding domain-containing protein.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSPMGP00000003161	ENSPMGP00000003695	TBP-binding domain-containing protein.	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSPMGP00000003161	ENSPMGP00000005067	TBP-binding domain-containing protein.	TAF domain-containing protein.	0.986
ENSPMGP00000003161	ENSPMGP00000005112	TBP-binding domain-containing protein.	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSPMGP00000003161	ENSPMGP00000006844	TBP-binding domain-containing protein.	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto.	0.999
ENSPMGP00000003161	ENSPMGP00000008685	TBP-binding domain-containing protein.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.999
ENSPMGP00000003161	ENSPMGP00000013470	TBP-binding domain-containing protein.	General transcription factor IIB.	0.990
ENSPMGP00000003161	ENSPMGP00000016159	TBP-binding domain-containing protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.970
ENSPMGP00000003161	ENSPMGP00000022193	TBP-binding domain-containing protein.	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999