14 items (Periophthalmus magnuspinnatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPMGP00000020165	ISY1 splicing factor homolog. (282 aa)
	ENSPMGP00000026179	Uncharacterized protein. (475 aa)
	ENSPMGP00000026176	MPN domain-containing protein. (322 aa)
	ENSPMGP00000025210	Uncharacterized protein. (121 aa)
	ENSPMGP00000025208	Uncharacterized protein. (207 aa)
	ENSPMGP00000024891	CWC22 spliceosome associated protein homolog. (913 aa)
	ENSPMGP00000022001	Q_MOTIF domain-containing protein. (98 aa)
	ENSPMGP00000021785	RNA binding motif protein 22. (411 aa)
	ENSPMGP00000021655	Pre-mRNA processing factor 19. (502 aa)
	ENSPMGP00000015908	Cir_N domain-containing protein. (80 aa)
	ENSPMGP00000012267	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (175 aa)
	ENSPMGP00000011384	Eukaryotic translation initiation factor 4A3. (156 aa)
	ENSPMGP00000001058	SH2 domain-containing protein. (385 aa)
	ENSPMGP00000001054	YJU2 splicing factor homolog. (335 aa)

Your Current Organism:

Periophthalmus magnuspinnatus

NCBI taxonomy Id: 409849
Other names: P. magnuspinnatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSPMGP00000001054	ENSPMGP00000011384	YJU2 splicing factor homolog.	Eukaryotic translation initiation factor 4A3.	0.793
ENSPMGP00000001054	ENSPMGP00000012267	YJU2 splicing factor homolog.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.717
ENSPMGP00000001054	ENSPMGP00000015908	YJU2 splicing factor homolog.	Cir_N domain-containing protein.	0.994
ENSPMGP00000001054	ENSPMGP00000020165	YJU2 splicing factor homolog.	ISY1 splicing factor homolog.	0.974
ENSPMGP00000001054	ENSPMGP00000021655	YJU2 splicing factor homolog.	Pre-mRNA processing factor 19.	0.986
ENSPMGP00000001054	ENSPMGP00000021785	YJU2 splicing factor homolog.	RNA binding motif protein 22.	0.970
ENSPMGP00000001054	ENSPMGP00000022001	YJU2 splicing factor homolog.	Q_MOTIF domain-containing protein.	0.793
ENSPMGP00000001054	ENSPMGP00000024891	YJU2 splicing factor homolog.	CWC22 spliceosome associated protein homolog.	0.991
ENSPMGP00000001054	ENSPMGP00000025208	YJU2 splicing factor homolog.	Uncharacterized protein.	0.955
ENSPMGP00000001054	ENSPMGP00000025210	YJU2 splicing factor homolog.	Uncharacterized protein.	0.955
ENSPMGP00000001054	ENSPMGP00000026176	YJU2 splicing factor homolog.	MPN domain-containing protein.	0.927
ENSPMGP00000001054	ENSPMGP00000026179	YJU2 splicing factor homolog.	Uncharacterized protein.	0.927
ENSPMGP00000001058	ENSPMGP00000011384	SH2 domain-containing protein.	Eukaryotic translation initiation factor 4A3.	0.769
ENSPMGP00000001058	ENSPMGP00000012267	SH2 domain-containing protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.645
ENSPMGP00000001058	ENSPMGP00000015908	SH2 domain-containing protein.	Cir_N domain-containing protein.	0.996
ENSPMGP00000001058	ENSPMGP00000020165	SH2 domain-containing protein.	ISY1 splicing factor homolog.	0.952
ENSPMGP00000001058	ENSPMGP00000021655	SH2 domain-containing protein.	Pre-mRNA processing factor 19.	0.931
ENSPMGP00000001058	ENSPMGP00000021785	SH2 domain-containing protein.	RNA binding motif protein 22.	0.830
ENSPMGP00000001058	ENSPMGP00000022001	SH2 domain-containing protein.	Q_MOTIF domain-containing protein.	0.769
ENSPMGP00000001058	ENSPMGP00000024891	SH2 domain-containing protein.	CWC22 spliceosome associated protein homolog.	0.985