(5 nodes) Nuclear receptor coactivator, interlocking network (Periophthalmus magnuspinnatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPMGP00000028859	Nuclear receptor coactivator 3. (1294 aa)
	ENSPMGP00000006415	CREB binding protein a. (2183 aa)
	ENSPMGP00000011773	Nuclear receptor coactivator 2. (1389 aa)
	ENSPMGP00000022010	E1A binding protein p300 b. (2642 aa)
	ENSPMGP00000025117	Nuclear receptor coactivator 1. (1344 aa)

Your Current Organism:

Periophthalmus magnuspinnatus

NCBI taxonomy Id: 409849
Other names: P. magnuspinnatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSPMGP00000006415	ENSPMGP00000011773	CREB binding protein a.	Nuclear receptor coactivator 2.	0.934
ENSPMGP00000006415	ENSPMGP00000022010	CREB binding protein a.	E1A binding protein p300 b.	0.995
ENSPMGP00000006415	ENSPMGP00000025117	CREB binding protein a.	Nuclear receptor coactivator 1.	0.934
ENSPMGP00000006415	ENSPMGP00000028859	CREB binding protein a.	Nuclear receptor coactivator 3.	0.934
ENSPMGP00000011773	ENSPMGP00000006415	Nuclear receptor coactivator 2.	CREB binding protein a.	0.934
ENSPMGP00000011773	ENSPMGP00000022010	Nuclear receptor coactivator 2.	E1A binding protein p300 b.	0.919
ENSPMGP00000011773	ENSPMGP00000025117	Nuclear receptor coactivator 2.	Nuclear receptor coactivator 1.	0.575
ENSPMGP00000022010	ENSPMGP00000006415	E1A binding protein p300 b.	CREB binding protein a.	0.995
ENSPMGP00000022010	ENSPMGP00000011773	E1A binding protein p300 b.	Nuclear receptor coactivator 2.	0.919
ENSPMGP00000022010	ENSPMGP00000025117	E1A binding protein p300 b.	Nuclear receptor coactivator 1.	0.919
ENSPMGP00000022010	ENSPMGP00000028859	E1A binding protein p300 b.	Nuclear receptor coactivator 3.	0.919
ENSPMGP00000025117	ENSPMGP00000006415	Nuclear receptor coactivator 1.	CREB binding protein a.	0.934
ENSPMGP00000025117	ENSPMGP00000011773	Nuclear receptor coactivator 1.	Nuclear receptor coactivator 2.	0.575
ENSPMGP00000025117	ENSPMGP00000022010	Nuclear receptor coactivator 1.	E1A binding protein p300 b.	0.919
ENSPMGP00000028859	ENSPMGP00000006415	Nuclear receptor coactivator 3.	CREB binding protein a.	0.934
ENSPMGP00000028859	ENSPMGP00000022010	Nuclear receptor coactivator 3.	E1A binding protein p300 b.	0.919