20 items (Periophthalmus magnuspinnatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCBTB1	Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (350 aa)
	ENSPMGP00000018175	Uncharacterized protein. (405 aa)
	ENSPMGP00000018529	Replication factor C (activator 1) 5. (336 aa)
	ENSPMGP00000019186	DNA polymerase. (1034 aa)
	ENSPMGP00000020400	Replication factor C (activator 1) 4. (358 aa)
	ENSPMGP00000027896	Si:dkey-28b4.7. (119 aa)
	ENSPMGP00000028425	Uncharacterized protein. (725 aa)
	ENSPMGP00000028598	Polymerase (DNA directed), delta 2, regulatory subunit. (446 aa)
	ENSPMGP00000029368	Replication factor C (activator 1) 3. (270 aa)
	ENSPMGP00000030015	RFC1 domain-containing protein. (135 aa)
	ENSPMGP00000030014	BRCT domain-containing protein. (398 aa)
	ENSPMGP00000002858	Uncharacterized protein. (158 aa)
	ENSPMGP00000003957	Replication factor C (activator 1) 2. (342 aa)
	ENSPMGP00000003968	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (248 aa)
	ENSPMGP00000004772	Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (571 aa)
	ENSPMGP00000007885	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (599 aa)
	ENSPMGP00000010348	DNA primase large subunit; Regulatory subunit of the DNA primase complex and component of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which play an essential role in the initiation of DNA synthesis. The primase subunit of the polymerase alpha complex initiates DNA synthesis by oligomerising short RNA primers on both leading and lagging strands. (495 aa)
	ENSPMGP00000011542	ATPase_AAA_core domain-containing protein. (799 aa)
	ENSPMGP00000012423	DNA primase; Belongs to the eukaryotic-type primase small subunit family. (405 aa)
	ENSPMGP00000015885	DNA polymerase. (1380 aa)

Your Current Organism:

Periophthalmus magnuspinnatus

NCBI taxonomy Id: 409849
Other names: P. magnuspinnatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMGP00000002858	RCBTB1	ENSPMGP00000002858	ENSPMGP00000012495	Uncharacterized protein.	Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1.	0.914
ENSPMGP00000003957	ENSPMGP00000003968	ENSPMGP00000003957	ENSPMGP00000003968	Replication factor C (activator 1) 2.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.999
ENSPMGP00000003957	ENSPMGP00000007885	ENSPMGP00000003957	ENSPMGP00000007885	Replication factor C (activator 1) 2.	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.	0.964
ENSPMGP00000003957	ENSPMGP00000010348	ENSPMGP00000003957	ENSPMGP00000010348	Replication factor C (activator 1) 2.	DNA primase large subunit; Regulatory subunit of the DNA primase complex and component of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which play an essential role in the initiation of DNA synthesis. The primase subunit of the polymerase alpha complex initiates DNA synthesis by oligomerising short RNA primers on both leading and lagging strands.	0.945
ENSPMGP00000003957	ENSPMGP00000011542	ENSPMGP00000003957	ENSPMGP00000011542	Replication factor C (activator 1) 2.	ATPase_AAA_core domain-containing protein.	0.987
ENSPMGP00000003957	ENSPMGP00000012423	ENSPMGP00000003957	ENSPMGP00000012423	Replication factor C (activator 1) 2.	DNA primase; Belongs to the eukaryotic-type primase small subunit family.	0.924
ENSPMGP00000003957	ENSPMGP00000015885	ENSPMGP00000003957	ENSPMGP00000015885	Replication factor C (activator 1) 2.	DNA polymerase.	0.956
ENSPMGP00000003957	ENSPMGP00000018175	ENSPMGP00000003957	ENSPMGP00000018175	Replication factor C (activator 1) 2.	Uncharacterized protein.	0.749
ENSPMGP00000003957	ENSPMGP00000018529	ENSPMGP00000003957	ENSPMGP00000018529	Replication factor C (activator 1) 2.	Replication factor C (activator 1) 5.	0.999
ENSPMGP00000003957	ENSPMGP00000019186	ENSPMGP00000003957	ENSPMGP00000019186	Replication factor C (activator 1) 2.	DNA polymerase.	0.893
ENSPMGP00000003957	ENSPMGP00000020400	ENSPMGP00000003957	ENSPMGP00000020400	Replication factor C (activator 1) 2.	Replication factor C (activator 1) 4.	0.999
ENSPMGP00000003957	ENSPMGP00000027896	ENSPMGP00000003957	ENSPMGP00000027896	Replication factor C (activator 1) 2.	Si:dkey-28b4.7.	0.507
ENSPMGP00000003957	ENSPMGP00000028425	ENSPMGP00000003957	ENSPMGP00000028425	Replication factor C (activator 1) 2.	Uncharacterized protein.	0.987
ENSPMGP00000003957	ENSPMGP00000028598	ENSPMGP00000003957	ENSPMGP00000028598	Replication factor C (activator 1) 2.	Polymerase (DNA directed), delta 2, regulatory subunit.	0.863
ENSPMGP00000003957	ENSPMGP00000029368	ENSPMGP00000003957	ENSPMGP00000029368	Replication factor C (activator 1) 2.	Replication factor C (activator 1) 3.	0.999
ENSPMGP00000003957	ENSPMGP00000030014	ENSPMGP00000003957	ENSPMGP00000030014	Replication factor C (activator 1) 2.	BRCT domain-containing protein.	0.993
ENSPMGP00000003957	ENSPMGP00000030015	ENSPMGP00000003957	ENSPMGP00000030015	Replication factor C (activator 1) 2.	RFC1 domain-containing protein.	0.992
ENSPMGP00000003968	ENSPMGP00000003957	ENSPMGP00000003968	ENSPMGP00000003957	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Replication factor C (activator 1) 2.	0.999
ENSPMGP00000003968	ENSPMGP00000007885	ENSPMGP00000003968	ENSPMGP00000007885	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.	0.965
ENSPMGP00000003968	ENSPMGP00000010348	ENSPMGP00000003968	ENSPMGP00000010348	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	DNA primase large subunit; Regulatory subunit of the DNA primase complex and component of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which play an essential role in the initiation of DNA synthesis. The primase subunit of the polymerase alpha complex initiates DNA synthesis by oligomerising short RNA primers on both leading and lagging strands.	0.981