53 items (Periophthalmus magnuspinnatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPMGP00000005585	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (160 aa)
	ENSPMGP00000005112	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (209 aa)
	ENSPMGP00000004832	TATA box binding protein like 2. (234 aa)
	ENSPMGP00000004576	CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (309 aa)
	ENSPMGP00000003695	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (623 aa)
	ENSPMGP00000003161	TBP-binding domain-containing protein. (401 aa)
	ENSPMGP00000002085	General transcription factor IIA, 1-like. (304 aa)
	ENSPMGP00000001668	TATA box binding protein. (289 aa)
	ENSPMGP00000001473	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (152 aa)
	ENSPMGP00000001355	Ssl1 domain-containing protein. (124 aa)
	ENSPMGP00000000804	General transcription factor IIA, 1. (377 aa)
	ENSPMGP00000000777	General transcription factor IIH, polypeptide 1. (545 aa)
	ENSPMGP00000000735	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (450 aa)
	ENSPMGP00000000232	Excision repair cross-complementation group 2. (659 aa)
	ENSPMGP00000000185	TAF4 domain-containing protein. (276 aa)
	ENSPMGP00000000039	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (506 aa)
	ENSPMGP00000028789	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (266 aa)
	ENSPMGP00000028551	Polymerase (RNA) II (DNA directed) polypeptide K. (58 aa)
	ENSPMGP00000027402	General transcription factor IIH, polypeptide 2. (247 aa)
	ENSPMGP00000027298	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1653 aa)
	ENSPMGP00000027168	Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (337 aa)
	ENSPMGP00000027015	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1016 aa)
	ENSPMGP00000026351	Polymerase (RNA) II (DNA directed) polypeptide J. (117 aa)
	ENSPMGP00000026345	Polymerase (RNA) II (DNA directed) polypeptide C. (244 aa)
	ENSPMGP00000026016	RPOL4c domain-containing protein. (109 aa)
	ENSPMGP00000025903	Uncharacterized protein. (112 aa)
	ENSPMGP00000025406	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (227 aa)
	ENSPMGP00000024747	Uncharacterized protein. (57 aa)
	ENSPMGP00000023476	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor. (566 aa)
	ENSPMGP00000022338	TBP-like 1. (187 aa)
	ENSPMGP00000022193	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (354 aa)
	ENSPMGP00000022103	General transcription factor IIF, polypeptide 2a. (245 aa)
	ENSPMGP00000022094	Excision repair cross-complementation group 3. (780 aa)
	ENSPMGP00000021087	Uncharacterized protein. (361 aa)
	ENSPMGP00000019940	Polymerase (RNA) II (DNA directed) polypeptide I; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (130 aa)
	ENSPMGP00000019457	General transcription factor IIE, polypeptide 1, alpha. (433 aa)
	ENSPMGP00000018782	General transcription factor IIH, polypeptide 3. (278 aa)
	ENSPMGP00000018480	Cyclin H; Belongs to the cyclin family. (314 aa)
	ENSPMGP00000018241	TFIIF_beta domain-containing protein. (158 aa)
	ENSPMGP00000017796	TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor. (777 aa)
	POLR2E	RNA polymerase II subunit E. (183 aa)
	ENSPMGP00000016159	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (116 aa)
	ENSPMGP00000014017	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (1124 aa)
	ENSPMGP00000013470	General transcription factor IIB. (310 aa)
	ENSPMGP00000011611	Polymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
	ENSPMGP00000010352	Polymerase (RNA) II (DNA directed) polypeptide G-like. (175 aa)
	ENSPMGP00000010064	TAF4 domain-containing protein. (278 aa)
	ENSPMGP00000008790	TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (749 aa)
	ENSPMGP00000008693	TAFH domain-containing protein. (915 aa)
	ENSPMGP00000008685	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family. (185 aa)
	ENSPMGP00000008418	Uncharacterized protein. (183 aa)
	ENSPMGP00000006844	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto. (920 aa)
	ENSPMGP00000005776	Polymerase (RNA) II (DNA directed) polypeptide L. (67 aa)

Your Current Organism:

Periophthalmus magnuspinnatus

NCBI taxonomy Id: 409849
Other names: P. magnuspinnatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMGP00000000039	ENSPMGP00000000185	ENSPMGP00000000039	ENSPMGP00000000185	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	TAF4 domain-containing protein.	0.863
ENSPMGP00000000039	ENSPMGP00000000232	ENSPMGP00000000039	ENSPMGP00000000232	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Excision repair cross-complementation group 2.	0.982
ENSPMGP00000000039	ENSPMGP00000000735	ENSPMGP00000000039	ENSPMGP00000000735	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.990
ENSPMGP00000000039	ENSPMGP00000000777	ENSPMGP00000000039	ENSPMGP00000000777	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	General transcription factor IIH, polypeptide 1.	0.987
ENSPMGP00000000039	ENSPMGP00000000804	ENSPMGP00000000039	ENSPMGP00000000804	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	General transcription factor IIA, 1.	0.974
ENSPMGP00000000039	ENSPMGP00000001355	ENSPMGP00000000039	ENSPMGP00000001355	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Ssl1 domain-containing protein.	0.971
ENSPMGP00000000039	ENSPMGP00000001473	ENSPMGP00000000039	ENSPMGP00000001473	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.936
ENSPMGP00000000039	ENSPMGP00000001668	ENSPMGP00000000039	ENSPMGP00000001668	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	TATA box binding protein.	0.970
ENSPMGP00000000039	ENSPMGP00000002085	ENSPMGP00000000039	ENSPMGP00000002085	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	General transcription factor IIA, 1-like.	0.974
ENSPMGP00000000039	ENSPMGP00000003161	ENSPMGP00000000039	ENSPMGP00000003161	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	TBP-binding domain-containing protein.	0.983
ENSPMGP00000000039	ENSPMGP00000003695	ENSPMGP00000000039	ENSPMGP00000003695	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.928
ENSPMGP00000000039	ENSPMGP00000004576	ENSPMGP00000000039	ENSPMGP00000004576	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex.	0.984
ENSPMGP00000000039	ENSPMGP00000004832	ENSPMGP00000000039	ENSPMGP00000004832	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	TATA box binding protein like 2.	0.970
ENSPMGP00000000039	ENSPMGP00000005112	ENSPMGP00000000039	ENSPMGP00000005112	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.968
ENSPMGP00000000039	ENSPMGP00000005585	ENSPMGP00000000039	ENSPMGP00000005585	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.980
ENSPMGP00000000039	ENSPMGP00000005776	ENSPMGP00000000039	ENSPMGP00000005776	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Polymerase (RNA) II (DNA directed) polypeptide L.	0.983
ENSPMGP00000000039	ENSPMGP00000006844	ENSPMGP00000000039	ENSPMGP00000006844	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto.	0.953
ENSPMGP00000000039	ENSPMGP00000008418	ENSPMGP00000000039	ENSPMGP00000008418	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.965
ENSPMGP00000000039	ENSPMGP00000008685	ENSPMGP00000000039	ENSPMGP00000008685	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.909
ENSPMGP00000000039	ENSPMGP00000008693	ENSPMGP00000000039	ENSPMGP00000008693	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	TAFH domain-containing protein.	0.863