10 items (Aspergillus thermomutatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CDV56_104041	AIP3 domain-containing protein. (1023 aa)
	CDV56_102187	Uncharacterized protein. (210 aa)
	CDV56_102635	Uncharacterized protein. (341 aa)
	PDA1	Pyruvate dehydrogenase E1 component subunit alpha; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (405 aa)
	CDV56_104213	Uncharacterized protein. (308 aa)
	CDV56_108081	Non-specific serine/threonine protein kinase. (833 aa)
	CDV56_101464	Uncharacterized protein. (317 aa)
	CDV56_106895	PH domain-containing protein. (962 aa)
	CDV56_106937	Uncharacterized protein. (922 aa)
	STE20	Signal transducing kinase of the PAK. (128 aa)

Your Current Organism:

Aspergillus thermomutatus

NCBI taxonomy Id: 41047
Other names: A. thermomutatus, Aspergillus fischeri var. thermomutatus, CBS 208.92, NRRL 20748, Neosartorya pseudofischeri

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDV56_104041	CDV56_108081	A0A397GJ80	A0A397HD52	AIP3 domain-containing protein.	Non-specific serine/threonine protein kinase.	0.446
CDV56_104041	STE20	A0A397GJ80	A0A397GN02	AIP3 domain-containing protein.	Signal transducing kinase of the PAK.	0.446
CDV56_106937	CDV56_108081	A0A397GPU4	A0A397HD52	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.946
CDV56_106937	STE20	A0A397GPU4	A0A397GN02	Uncharacterized protein.	Signal transducing kinase of the PAK.	0.936
CDV56_108081	CDV56_104041	A0A397HD52	A0A397GJ80	Non-specific serine/threonine protein kinase.	AIP3 domain-containing protein.	0.446
CDV56_108081	CDV56_106937	A0A397HD52	A0A397GPU4	Non-specific serine/threonine protein kinase.	Uncharacterized protein.	0.946
STE20	CDV56_104041	A0A397GN02	A0A397GJ80	Signal transducing kinase of the PAK.	AIP3 domain-containing protein.	0.446
STE20	CDV56_106937	A0A397GN02	A0A397GPU4	Signal transducing kinase of the PAK.	Uncharacterized protein.	0.936