22 items (Aspergillus candidus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2I2F0B7	Putative DNA-directed RNA polymerase III subunit 22.9 kDa. (193 aa)
	A0A2I2F0I2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1667 aa)
	A0A2I2F0J9	DNA-directed RNA polymerases I, II, and III subunit RPABC1. (235 aa)
	A0A2I2F2D7	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1447 aa)
	A0A2I2F3S0	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1744 aa)
	A0A2I2FLD7	DNA primase large subunit; DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication; Belongs to the eukaryotic-type primase large subunit family. (500 aa)
	A0A2I2FKJ6	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1247 aa)
	A0A2I2FHU7	DNA-directed RNA polymerase. (342 aa)
	A0A2I2FFT5	DNA polymerase IV. (669 aa)
	A0A2I2FPD6	DNA directed RNA polymerase. (75 aa)
	A0A2I2FLP5	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1221 aa)
	A0A2I2F6F5	DNA-directed RNA polymerase I, II, and III subunit Rpb6. (158 aa)
	A0A2I2F7U1	RBP11-like subunits of RNA polymerase. (128 aa)
	A0A2I2FDY7	Sin-like protein conserved region-domain-containing protein. (316 aa)
	A0A2I2FAK6	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (349 aa)
	A0A2I2FAN5	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1256 aa)
	A0A2I2FAP6	Uncharacterized protein. (426 aa)
	A0A2I2FB32	DNA-directed RNA polymerases I and III 40 kDa polypeptide. (374 aa)
	A0A2I2FDY0	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family. (1372 aa)
	A0A2I2EXS4	DNA primase; Belongs to the eukaryotic-type primase small subunit family. (521 aa)
	A0A2I2EYX6	DNA-directed RNA polymerase. (143 aa)
	A0A2I2EZ10	DNA-directed RNA polymerase, subunit N/Rpb10. (74 aa)

Your Current Organism:

Aspergillus candidus

NCBI taxonomy Id: 41067
Other names: A. candidus, CBS 566.65

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2I2EXS4	A0A2I2FLD7	DNA primase; Belongs to the eukaryotic-type primase small subunit family.	DNA primase large subunit; DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication; Belongs to the eukaryotic-type primase large subunit family.	0.999
A0A2I2EYX6	A0A2I2EZ10	DNA-directed RNA polymerase.	DNA-directed RNA polymerase, subunit N/Rpb10.	0.998
A0A2I2EYX6	A0A2I2F0B7	DNA-directed RNA polymerase.	Putative DNA-directed RNA polymerase III subunit 22.9 kDa.	0.997
A0A2I2EYX6	A0A2I2F0I2	DNA-directed RNA polymerase.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
A0A2I2EYX6	A0A2I2F0J9	DNA-directed RNA polymerase.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.998
A0A2I2EYX6	A0A2I2F2D7	DNA-directed RNA polymerase.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.996
A0A2I2EYX6	A0A2I2F6F5	DNA-directed RNA polymerase.	DNA-directed RNA polymerase I, II, and III subunit Rpb6.	0.998
A0A2I2EYX6	A0A2I2F7U1	DNA-directed RNA polymerase.	RBP11-like subunits of RNA polymerase.	0.722
A0A2I2EYX6	A0A2I2FAK6	DNA-directed RNA polymerase.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.995
A0A2I2EYX6	A0A2I2FAN5	DNA-directed RNA polymerase.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.953
A0A2I2EYX6	A0A2I2FAP6	DNA-directed RNA polymerase.	Uncharacterized protein.	0.998
A0A2I2EYX6	A0A2I2FB32	DNA-directed RNA polymerase.	DNA-directed RNA polymerases I and III 40 kDa polypeptide.	0.998
A0A2I2EYX6	A0A2I2FDY7	DNA-directed RNA polymerase.	Sin-like protein conserved region-domain-containing protein.	0.989
A0A2I2EYX6	A0A2I2FHU7	DNA-directed RNA polymerase.	DNA-directed RNA polymerase.	0.995
A0A2I2EYX6	A0A2I2FKJ6	DNA-directed RNA polymerase.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.993
A0A2I2EYX6	A0A2I2FLP5	DNA-directed RNA polymerase.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.995
A0A2I2EYX6	A0A2I2FPD6	DNA-directed RNA polymerase.	DNA directed RNA polymerase.	0.996
A0A2I2EZ10	A0A2I2EYX6	DNA-directed RNA polymerase, subunit N/Rpb10.	DNA-directed RNA polymerase.	0.998
A0A2I2EZ10	A0A2I2F0B7	DNA-directed RNA polymerase, subunit N/Rpb10.	Putative DNA-directed RNA polymerase III subunit 22.9 kDa.	0.995
A0A2I2EZ10	A0A2I2F0I2	DNA-directed RNA polymerase, subunit N/Rpb10.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999