25 items (Aspergillus candidus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2I2F0J9	DNA-directed RNA polymerases I, II, and III subunit RPABC1. (235 aa)
	A0A2I2FAP6	Uncharacterized protein. (426 aa)
	A0A2I2F9N1	Uncharacterized protein. (819 aa)
	A0A2I2F7V4	Kinase-like domain-containing protein; Belongs to the protein kinase superfamily. (407 aa)
	A0A2I2F6F5	DNA-directed RNA polymerase I, II, and III subunit Rpb6. (158 aa)
	A0A2I2F1T2	RNA polymerase I-specific transcription initiation factor RRN6-like protein. (975 aa)
	A0A2I2F0I2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1667 aa)
	A0A2I2F059	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (343 aa)
	A0A2I2EZQ0	A49-like RNA polymerase I associated factor-domain-containing protein. (497 aa)
	A0A2I2EZ10	DNA-directed RNA polymerase, subunit N/Rpb10. (74 aa)
	A0A2I2EY61	RNA polymerase II transcription factor subunit 1. (636 aa)
	A0A2I2EYX6	DNA-directed RNA polymerase. (143 aa)
	A0A2I2FGF9	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (121 aa)
	A0A2I2FK39	Transcription factor S-II-domain-containing protein. (103 aa)
	A0A2I2FKJ6	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1247 aa)
	A0A2I2FLK7	RNA polymerase I-specific transcription initiation factor RRN3 superfamily. (703 aa)
	A0A2I2FLZ7	Uncharacterized protein. (582 aa)
	A0A2I2FN19	TBP associated factor. (1909 aa)
	A0A2I2FNF1	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (144 aa)
	A0A2I2FPD6	DNA directed RNA polymerase. (75 aa)
	A0A2I2FPZ7	Uncharacterized protein. (669 aa)
	A0A2I2FCC7	Transcription factor S-II, central domain-domain-containing protein. (303 aa)
	A0A2I2FB93	Uncharacterized protein. (239 aa)
	A0A2I2FB32	DNA-directed RNA polymerases I and III 40 kDa polypeptide. (374 aa)
	A0A2I2FAU7	ECM11 domain-containing protein. (987 aa)

Your Current Organism:

Aspergillus candidus

NCBI taxonomy Id: 41067
Other names: A. candidus, CBS 566.65

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2I2EY61	A0A2I2EZ10	RNA polymerase II transcription factor subunit 1.	DNA-directed RNA polymerase, subunit N/Rpb10.	0.968
A0A2I2EY61	A0A2I2EZQ0	RNA polymerase II transcription factor subunit 1.	A49-like RNA polymerase I associated factor-domain-containing protein.	0.675
A0A2I2EY61	A0A2I2F0J9	RNA polymerase II transcription factor subunit 1.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.968
A0A2I2EY61	A0A2I2F6F5	RNA polymerase II transcription factor subunit 1.	DNA-directed RNA polymerase I, II, and III subunit Rpb6.	0.970
A0A2I2EY61	A0A2I2F7V4	RNA polymerase II transcription factor subunit 1.	Kinase-like domain-containing protein; Belongs to the protein kinase superfamily.	0.981
A0A2I2EY61	A0A2I2FB32	RNA polymerase II transcription factor subunit 1.	DNA-directed RNA polymerases I and III 40 kDa polypeptide.	0.923
A0A2I2EY61	A0A2I2FCC7	RNA polymerase II transcription factor subunit 1.	Transcription factor S-II, central domain-domain-containing protein.	0.842
A0A2I2EY61	A0A2I2FGF9	RNA polymerase II transcription factor subunit 1.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.836
A0A2I2EY61	A0A2I2FK39	RNA polymerase II transcription factor subunit 1.	Transcription factor S-II-domain-containing protein.	0.836
A0A2I2EY61	A0A2I2FKJ6	RNA polymerase II transcription factor subunit 1.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.890
A0A2I2EY61	A0A2I2FNF1	RNA polymerase II transcription factor subunit 1.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.968
A0A2I2EY61	A0A2I2FPD6	RNA polymerase II transcription factor subunit 1.	DNA directed RNA polymerase.	0.968
A0A2I2EYX6	A0A2I2EZ10	DNA-directed RNA polymerase.	DNA-directed RNA polymerase, subunit N/Rpb10.	0.998
A0A2I2EYX6	A0A2I2EZQ0	DNA-directed RNA polymerase.	A49-like RNA polymerase I associated factor-domain-containing protein.	0.990
A0A2I2EYX6	A0A2I2F0I2	DNA-directed RNA polymerase.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
A0A2I2EYX6	A0A2I2F0J9	DNA-directed RNA polymerase.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.998
A0A2I2EYX6	A0A2I2F1T2	DNA-directed RNA polymerase.	RNA polymerase I-specific transcription initiation factor RRN6-like protein.	0.622
A0A2I2EYX6	A0A2I2F6F5	DNA-directed RNA polymerase.	DNA-directed RNA polymerase I, II, and III subunit Rpb6.	0.998
A0A2I2EYX6	A0A2I2FAP6	DNA-directed RNA polymerase.	Uncharacterized protein.	0.998
A0A2I2EYX6	A0A2I2FAU7	DNA-directed RNA polymerase.	ECM11 domain-containing protein.	0.730