(41 nodes) Regulation of mRNA processing network (Aspergillus candidus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2I2EXR9	Uncharacterized protein. (182 aa)
	A0A2I2F3G1	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (278 aa)
	A0A2I2F396	Kinase-like domain-containing protein. (389 aa)
	A0A2I2F8S8	Protein kinase-like protein. (488 aa)
	A0A2I2F381	Uncharacterized protein. (397 aa)
	A0A2I2F2P8	Uncharacterized protein. (575 aa)
	A0A2I2FAM1	Protein kinase domain-containing protein. (76 aa)
	A0A2I2F9T3	Protein kinase. (411 aa)
	A0A2I2F950	CMGC protein kinase. (375 aa)
	A0A2I2FHB7	Kinase-like domain-containing protein. (394 aa)
	A0A2I2FGR4	Isoflavone reductase family protein. (315 aa)
	A0A2I2FG44	Kinase-like domain-containing protein. (443 aa)
	A0A2I2FG05	Putative nuclear polyadenylated RNA-binding protein Nab2. (493 aa)
	A0A2I2F6V6	TPR-like protein. (566 aa)
	A0A2I2FBY3	Coiled-coil domain-containing protein 55-domain containing protein. (465 aa)
	A0A2I2FBF4	Uncharacterized protein. (554 aa)
	A0A2I2FBE8	GST N-terminal domain-containing protein. (288 aa)
	A0A2I2FBB6	Kinase-like domain-containing protein. (294 aa)
	A0A2I2FAS9	Protein kinase-like protein. (432 aa)
	A0A2I2FQ36	Protein kinase-like protein. (508 aa)
	A0A2I2FPU7	RRM domain-containing protein. (324 aa)
	A0A2I2FPA6	Uncharacterized protein. (166 aa)
	A0A2I2FNI4	Protein kinase-like protein. (268 aa)
	A0A2I2FK13	Protein kinase-like protein. (430 aa)
	A0A2I2FIF7	Protein kinase-like protein. (519 aa)
	A0A2I2FHP2	Kinase-like domain-containing protein. (412 aa)
	A0A2I2EXK6	Protein kinase-like protein; Belongs to the protein kinase superfamily. (401 aa)
	A0A2I2F6H9	Protein kinase-like protein. (780 aa)
	A0A2I2FFD8	Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family. (1427 aa)
	A0A2I2FE13	Kinase-like domain-containing protein. (395 aa)
	A0A2I2FDZ4	Carboxylic ester hydrolase; Belongs to the tannase family. (1039 aa)
	A0A2I2FDD8	Uncharacterized protein. (366 aa)
	A0A2I2FCK2	PWI domain-containing protein. (518 aa)
	A0A2I2FCC7	Transcription factor S-II, central domain-domain-containing protein. (303 aa)
	A0A2I2FC48	NAD(P)-binding protein. (307 aa)
	A0A2I2F671	Uncharacterized protein. (569 aa)
	A0A2I2F509	GST N-terminal domain-containing protein. (267 aa)
	A0A2I2F4U0	F-box domain protein. (660 aa)
	A0A2I2F0H2	Uncharacterized protein. (135 aa)
	A0A2I2F0C1	Uncharacterized protein. (225 aa)
	A0A2I2EZD4	Protein kinase-like protein. (261 aa)

Your Current Organism:

Aspergillus candidus

NCBI taxonomy Id: 41067
Other names: A. candidus, CBS 566.65

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2I2EXK6	A0A2I2F671	Protein kinase-like protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.406
A0A2I2F0H2	A0A2I2F671	Uncharacterized protein.	Uncharacterized protein.	0.406
A0A2I2F2P8	A0A2I2F381	Uncharacterized protein.	Uncharacterized protein.	0.475
A0A2I2F2P8	A0A2I2F671	Uncharacterized protein.	Uncharacterized protein.	0.418
A0A2I2F2P8	A0A2I2F6H9	Uncharacterized protein.	Protein kinase-like protein.	0.712
A0A2I2F2P8	A0A2I2FBF4	Uncharacterized protein.	Uncharacterized protein.	0.438
A0A2I2F2P8	A0A2I2FCK2	Uncharacterized protein.	PWI domain-containing protein.	0.687
A0A2I2F2P8	A0A2I2FPA6	Uncharacterized protein.	Uncharacterized protein.	0.438
A0A2I2F2P8	A0A2I2FPU7	Uncharacterized protein.	RRM domain-containing protein.	0.753
A0A2I2F381	A0A2I2F2P8	Uncharacterized protein.	Uncharacterized protein.	0.475
A0A2I2F671	A0A2I2EXK6	Uncharacterized protein.	Protein kinase-like protein; Belongs to the protein kinase superfamily.	0.406
A0A2I2F671	A0A2I2F0H2	Uncharacterized protein.	Uncharacterized protein.	0.406
A0A2I2F671	A0A2I2F2P8	Uncharacterized protein.	Uncharacterized protein.	0.418
A0A2I2F671	A0A2I2F950	Uncharacterized protein.	CMGC protein kinase.	0.413
A0A2I2F671	A0A2I2F9T3	Uncharacterized protein.	Protein kinase.	0.406
A0A2I2F671	A0A2I2FAM1	Uncharacterized protein.	Protein kinase domain-containing protein.	0.413
A0A2I2F671	A0A2I2FAS9	Uncharacterized protein.	Protein kinase-like protein.	0.406
A0A2I2F671	A0A2I2FBB6	Uncharacterized protein.	Kinase-like domain-containing protein.	0.406
A0A2I2F671	A0A2I2FE13	Uncharacterized protein.	Kinase-like domain-containing protein.	0.413
A0A2I2F671	A0A2I2FHB7	Uncharacterized protein.	Kinase-like domain-containing protein.	0.406