11 items (Aspergillus candidus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2I2F1X4	Nucleolar protein,Nop52-domain-containing protein. (318 aa)
	A0A2I2F963	Putative nucleolar protein. (548 aa)
	A0A2I2F991	Nop14-like protein. (910 aa)
	A0A2I2FGJ0	Bystin-domain-containing protein. (497 aa)
	A0A2I2FHV3	Putative pre-rRNA processing protein Tsr1. (802 aa)
	A0A2I2FKM6	Putative HEAT repeat protein. (2624 aa)
	A0A2I2FLQ4	Ribosome biogenesis protein SLX9-domain-containing protein. (181 aa)
	A0A2I2FNA3	Serine/threonine-protein kinase RIO2. (410 aa)
	A0A2I2EY43	Uncharacterized protein. (297 aa)
	A0A2I2EYB4	RRM domain-containing protein. (476 aa)
	A0A2I2EZM2	Low temperature viability protein. (502 aa)

Your Current Organism:

Aspergillus candidus

NCBI taxonomy Id: 41067
Other names: A. candidus, CBS 566.65

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2I2EY43	A0A2I2EYB4	Uncharacterized protein.	RRM domain-containing protein.	0.753
A0A2I2EY43	A0A2I2F1X4	Uncharacterized protein.	Nucleolar protein,Nop52-domain-containing protein.	0.416
A0A2I2EY43	A0A2I2F991	Uncharacterized protein.	Nop14-like protein.	0.428
A0A2I2EY43	A0A2I2FGJ0	Uncharacterized protein.	Bystin-domain-containing protein.	0.466
A0A2I2EYB4	A0A2I2EY43	RRM domain-containing protein.	Uncharacterized protein.	0.753
A0A2I2EYB4	A0A2I2EZM2	RRM domain-containing protein.	Low temperature viability protein.	0.892
A0A2I2EYB4	A0A2I2F1X4	RRM domain-containing protein.	Nucleolar protein,Nop52-domain-containing protein.	0.990
A0A2I2EYB4	A0A2I2F963	RRM domain-containing protein.	Putative nucleolar protein.	0.857
A0A2I2EYB4	A0A2I2F991	RRM domain-containing protein.	Nop14-like protein.	0.875
A0A2I2EYB4	A0A2I2FGJ0	RRM domain-containing protein.	Bystin-domain-containing protein.	0.904
A0A2I2EYB4	A0A2I2FHV3	RRM domain-containing protein.	Putative pre-rRNA processing protein Tsr1.	0.844
A0A2I2EYB4	A0A2I2FKM6	RRM domain-containing protein.	Putative HEAT repeat protein.	0.757
A0A2I2EYB4	A0A2I2FNA3	RRM domain-containing protein.	Serine/threonine-protein kinase RIO2.	0.698
A0A2I2EZM2	A0A2I2EYB4	Low temperature viability protein.	RRM domain-containing protein.	0.892
A0A2I2EZM2	A0A2I2F1X4	Low temperature viability protein.	Nucleolar protein,Nop52-domain-containing protein.	0.754
A0A2I2EZM2	A0A2I2F963	Low temperature viability protein.	Putative nucleolar protein.	0.851
A0A2I2EZM2	A0A2I2F991	Low temperature viability protein.	Nop14-like protein.	0.923
A0A2I2EZM2	A0A2I2FGJ0	Low temperature viability protein.	Bystin-domain-containing protein.	0.999
A0A2I2EZM2	A0A2I2FHV3	Low temperature viability protein.	Putative pre-rRNA processing protein Tsr1.	0.999
A0A2I2EZM2	A0A2I2FKM6	Low temperature viability protein.	Putative HEAT repeat protein.	0.507