(19 nodes) Carboxy-terminal domain protein kinase complex network (Aspergillus candidus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2I2FFS3	GDSL Lipase/Acylhydrolase family protein. (260 aa)
	A0A2I2FE42	Protein kinase-like protein. (647 aa)
	A0A2I2FDV0	Putative cyclin Ccl1; Belongs to the cyclin family. (433 aa)
	A0A2I2FAR1	Uncharacterized protein. (272 aa)
	A0A2I2F9H8	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (479 aa)
	A0A2I2F7V4	Kinase-like domain-containing protein; Belongs to the protein kinase superfamily. (407 aa)
	A0A2I2F3R5	Transcription factor TFIIH complex subunit Tfb5-domain-containing protein. (112 aa)
	A0A2I2EZI2	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (456 aa)
	A0A2I2EYQ7	Serine/threonine-protein kinase bur1. (539 aa)
	A0A2I2EY61	RNA polymerase II transcription factor subunit 1. (636 aa)
	A0A2I2FNX5	DNA repair helicase RAD25. (825 aa)
	A0A2I2FNW9	Protein kinase domain-containing protein. (1046 aa)
	A0A2I2FNA1	TFIIH subunit Tfb4/p34. (391 aa)
	A0A2I2FM50	Uncharacterized protein. (430 aa)
	A0A2I2FJU3	Cyclin-like protein; Belongs to the cyclin family. (789 aa)
	A0A2I2FHX4	Uncharacterized protein. (709 aa)
	A0A2I2FGV8	CDK-activating kinase assembly factor MAT1. (357 aa)
	A0A2I2FFW6	CTD kinase subunit gamma CTK3-domain-containing protein. (236 aa)
	A0A2I2FEW6	Cyclin-like protein; Belongs to the cyclin family. (387 aa)

Your Current Organism:

Aspergillus candidus

NCBI taxonomy Id: 41067
Other names: A. candidus, CBS 566.65

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2I2EY61	A0A2I2EZI2	RNA polymerase II transcription factor subunit 1.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.999
A0A2I2EY61	A0A2I2F3R5	RNA polymerase II transcription factor subunit 1.	Transcription factor TFIIH complex subunit Tfb5-domain-containing protein.	0.997
A0A2I2EY61	A0A2I2F7V4	RNA polymerase II transcription factor subunit 1.	Kinase-like domain-containing protein; Belongs to the protein kinase superfamily.	0.981
A0A2I2EY61	A0A2I2F9H8	RNA polymerase II transcription factor subunit 1.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.999
A0A2I2EY61	A0A2I2FDV0	RNA polymerase II transcription factor subunit 1.	Putative cyclin Ccl1; Belongs to the cyclin family.	0.989
A0A2I2EY61	A0A2I2FGV8	RNA polymerase II transcription factor subunit 1.	CDK-activating kinase assembly factor MAT1.	0.995
A0A2I2EY61	A0A2I2FM50	RNA polymerase II transcription factor subunit 1.	Uncharacterized protein.	0.972
A0A2I2EY61	A0A2I2FNA1	RNA polymerase II transcription factor subunit 1.	TFIIH subunit Tfb4/p34.	0.999
A0A2I2EY61	A0A2I2FNX5	RNA polymerase II transcription factor subunit 1.	DNA repair helicase RAD25.	0.999
A0A2I2EYQ7	A0A2I2F7V4	Serine/threonine-protein kinase bur1.	Kinase-like domain-containing protein; Belongs to the protein kinase superfamily.	0.824
A0A2I2EYQ7	A0A2I2FDV0	Serine/threonine-protein kinase bur1.	Putative cyclin Ccl1; Belongs to the cyclin family.	0.758
A0A2I2EYQ7	A0A2I2FEW6	Serine/threonine-protein kinase bur1.	Cyclin-like protein; Belongs to the cyclin family.	0.946
A0A2I2EYQ7	A0A2I2FFW6	Serine/threonine-protein kinase bur1.	CTD kinase subunit gamma CTK3-domain-containing protein.	0.839
A0A2I2EYQ7	A0A2I2FGV8	Serine/threonine-protein kinase bur1.	CDK-activating kinase assembly factor MAT1.	0.657
A0A2I2EYQ7	A0A2I2FHX4	Serine/threonine-protein kinase bur1.	Uncharacterized protein.	0.842
A0A2I2EYQ7	A0A2I2FJU3	Serine/threonine-protein kinase bur1.	Cyclin-like protein; Belongs to the cyclin family.	0.992
A0A2I2EYQ7	A0A2I2FM50	Serine/threonine-protein kinase bur1.	Uncharacterized protein.	0.597
A0A2I2EYQ7	A0A2I2FNW9	Serine/threonine-protein kinase bur1.	Protein kinase domain-containing protein.	0.707
A0A2I2EYQ7	A0A2I2FNX5	Serine/threonine-protein kinase bur1.	DNA repair helicase RAD25.	0.649
A0A2I2EZI2	A0A2I2EY61	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	RNA polymerase II transcription factor subunit 1.	0.999