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mrpD mrpD GFO_0152 GFO_0152 GFO_0161 GFO_0161 nrfD/hmeB nrfD/hmeB ctaD ctaD ctaE ctaE cyoC cyoC GFO_0194 GFO_0194 nqrB nqrB nqrE nqrE icd icd sucC sucC GFO_0961 GFO_0961 GFO_0962 GFO_0962 acnA acnA GFO_1398 GFO_1398 ccoN/ccoO ccoN/ccoO ppc ppc GFO_1602 GFO_1602 sucD sucD fumC fumC acnA-2 acnA-2 mdh mdh gltA gltA sucB sucB sucA sucA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
mrpDNa(+)/H(+) antiporter subunit D. (504 aa)
GFO_0152Protein containing metallophosphoesterase domain. (205 aa)
GFO_0161Iron-sulfur binding oxidoreductase. (1020 aa)
nrfD/hmeBConserved hypothetical protein, membrane. (597 aa)
ctaDCytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family. (607 aa)
ctaECytochrome c oxidase subunit III. (193 aa)
cyoCCytochrome o ubiquinol oxidase subunit III. (326 aa)
GFO_0194Membrane protein containing DUF420. (179 aa)
nqrBNa-translocating NADH-quinone reductase subunit B; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol. (392 aa)
nqrENa-translocating NADH-quinone reductase subunit E; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol; Belongs to the NqrDE/RnfAE family. (204 aa)
icdNADP-dependent monomeric type isocitrate dehydrogenase; Belongs to the monomeric-type IDH family. (742 aa)
sucCsuccinyl-CoA synthetase beta chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (398 aa)
GFO_0961Cytochrome bd ubiquinol oxidase subunit I. (433 aa)
GFO_0962Cytochrome bd ubiquinol oxidase subunit II. (341 aa)
acnAAconitase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (929 aa)
GFO_1398Cbb3-type cytochrome c oxidase subunit I. (602 aa)
ccoN/ccoOCbb3-type cytochrome c oxidase subunit I and II fusion protein; Belongs to the heme-copper respiratory oxidase family. (731 aa)
ppcPhosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle. (857 aa)
GFO_1602Aconitase. (661 aa)
sucDsuccinyl-CoA ligase subunit alpha; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (291 aa)
fumCFumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (465 aa)
acnA-2Aconitate hydratase. (755 aa)
mdhMalate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. (308 aa)
gltAClass I citrate synthase; Belongs to the citrate synthase family. (427 aa)
sucBDihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (438 aa)
sucA2-oxoglutarate dehydrogenase E1 component. (926 aa)
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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