(10 nodes) Lysine degradation network (Solanum tuberosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M1AI70_SOLTU	Uncharacterized protein. (829 aa)
	M1BHD2_SOLTU	Uncharacterized protein. (478 aa)
	M1BIV4_SOLTU	SET domain-containing protein. (328 aa)
	M1BVX4_SOLTU	Uncharacterized protein. (482 aa)
	M1C210_SOLTU	Uncharacterized protein. (315 aa)
	M1C887_SOLTU	Uncharacterized protein. (399 aa)
	M1CHE4_SOLTU	Uncharacterized protein. (1056 aa)
	M1CUR7_SOLTU	Uncharacterized protein. (660 aa)
	M1D3G4_SOLTU	Uncharacterized protein. (880 aa)
	M1D3G6_SOLTU	Uncharacterized protein. (611 aa)

Your Current Organism:

Solanum tuberosum

NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M1AI70_SOLTU	M1BHD2_SOLTU	M1AI70	M1BHD2	Uncharacterized protein.	Uncharacterized protein.	0.914
M1AI70_SOLTU	M1BIV4_SOLTU	M1AI70	M1BIV4	Uncharacterized protein.	SET domain-containing protein.	0.912
M1AI70_SOLTU	M1BVX4_SOLTU	M1AI70	M1BVX4	Uncharacterized protein.	Uncharacterized protein.	0.912
M1AI70_SOLTU	M1C210_SOLTU	M1AI70	M1C210	Uncharacterized protein.	Uncharacterized protein.	0.908
M1AI70_SOLTU	M1C887_SOLTU	M1AI70	M1C887	Uncharacterized protein.	Uncharacterized protein.	0.914
M1AI70_SOLTU	M1CHE4_SOLTU	M1AI70	M1CHE4	Uncharacterized protein.	Uncharacterized protein.	0.914
M1AI70_SOLTU	M1CUR7_SOLTU	M1AI70	M1CUR7	Uncharacterized protein.	Uncharacterized protein.	0.912
M1AI70_SOLTU	M1D3G4_SOLTU	M1AI70	M1D3G4	Uncharacterized protein.	Uncharacterized protein.	0.912
M1AI70_SOLTU	M1D3G6_SOLTU	M1AI70	M1D3G6	Uncharacterized protein.	Uncharacterized protein.	0.912
M1BHD2_SOLTU	M1AI70_SOLTU	M1BHD2	M1AI70	Uncharacterized protein.	Uncharacterized protein.	0.914
M1BHD2_SOLTU	M1BIV4_SOLTU	M1BHD2	M1BIV4	Uncharacterized protein.	SET domain-containing protein.	0.918
M1BHD2_SOLTU	M1BVX4_SOLTU	M1BHD2	M1BVX4	Uncharacterized protein.	Uncharacterized protein.	0.905
M1BHD2_SOLTU	M1C210_SOLTU	M1BHD2	M1C210	Uncharacterized protein.	Uncharacterized protein.	0.902
M1BHD2_SOLTU	M1C887_SOLTU	M1BHD2	M1C887	Uncharacterized protein.	Uncharacterized protein.	0.900
M1BHD2_SOLTU	M1CHE4_SOLTU	M1BHD2	M1CHE4	Uncharacterized protein.	Uncharacterized protein.	0.905
M1BHD2_SOLTU	M1CUR7_SOLTU	M1BHD2	M1CUR7	Uncharacterized protein.	Uncharacterized protein.	0.907
M1BHD2_SOLTU	M1D3G4_SOLTU	M1BHD2	M1D3G4	Uncharacterized protein.	Uncharacterized protein.	0.905
M1BHD2_SOLTU	M1D3G6_SOLTU	M1BHD2	M1D3G6	Uncharacterized protein.	Uncharacterized protein.	0.905
M1BIV4_SOLTU	M1AI70_SOLTU	M1BIV4	M1AI70	SET domain-containing protein.	Uncharacterized protein.	0.912
M1BIV4_SOLTU	M1BHD2_SOLTU	M1BIV4	M1BHD2	SET domain-containing protein.	Uncharacterized protein.	0.918