(6 nodes) Chromo shadow domain, and Putative E3 ubiquitin-protein ligase RING1a/b network (Solanum tuberosum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M1A6C8_SOLTU	Uncharacterized protein. (395 aa)
	M1B7N1_SOLTU	RING-type domain-containing protein. (430 aa)
	M1CWP4_SOLTU	RING-type domain-containing protein. (368 aa)
	M1D2M5_SOLTU	Chromo domain-containing protein. (463 aa)
	M1D452_SOLTU	Chromo domain-containing protein. (491 aa)
	M1D696_SOLTU	RING-type domain-containing protein. (511 aa)

Your Current Organism:

Solanum tuberosum

NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M1A6C8_SOLTU	M1CWP4_SOLTU	M1A6C8	M1CWP4	Uncharacterized protein.	RING-type domain-containing protein.	0.753
M1A6C8_SOLTU	M1D696_SOLTU	M1A6C8	M1D696	Uncharacterized protein.	RING-type domain-containing protein.	0.753
M1B7N1_SOLTU	M1CWP4_SOLTU	M1B7N1	M1CWP4	RING-type domain-containing protein.	RING-type domain-containing protein.	0.811
M1B7N1_SOLTU	M1D696_SOLTU	M1B7N1	M1D696	RING-type domain-containing protein.	RING-type domain-containing protein.	0.802
M1CWP4_SOLTU	M1A6C8_SOLTU	M1CWP4	M1A6C8	RING-type domain-containing protein.	Uncharacterized protein.	0.753
M1CWP4_SOLTU	M1B7N1_SOLTU	M1CWP4	M1B7N1	RING-type domain-containing protein.	RING-type domain-containing protein.	0.811
M1CWP4_SOLTU	M1D2M5_SOLTU	M1CWP4	M1D2M5	RING-type domain-containing protein.	Chromo domain-containing protein.	0.607
M1CWP4_SOLTU	M1D452_SOLTU	M1CWP4	M1D452	RING-type domain-containing protein.	Chromo domain-containing protein.	0.607
M1D2M5_SOLTU	M1CWP4_SOLTU	M1D2M5	M1CWP4	Chromo domain-containing protein.	RING-type domain-containing protein.	0.607
M1D2M5_SOLTU	M1D696_SOLTU	M1D2M5	M1D696	Chromo domain-containing protein.	RING-type domain-containing protein.	0.607
M1D452_SOLTU	M1CWP4_SOLTU	M1D452	M1CWP4	Chromo domain-containing protein.	RING-type domain-containing protein.	0.607
M1D452_SOLTU	M1D696_SOLTU	M1D452	M1D696	Chromo domain-containing protein.	RING-type domain-containing protein.	0.607
M1D696_SOLTU	M1A6C8_SOLTU	M1D696	M1A6C8	RING-type domain-containing protein.	Uncharacterized protein.	0.753
M1D696_SOLTU	M1B7N1_SOLTU	M1D696	M1B7N1	RING-type domain-containing protein.	RING-type domain-containing protein.	0.802
M1D696_SOLTU	M1D2M5_SOLTU	M1D696	M1D2M5	RING-type domain-containing protein.	Chromo domain-containing protein.	0.607
M1D696_SOLTU	M1D452_SOLTU	M1D696	M1D452	RING-type domain-containing protein.	Chromo domain-containing protein.	0.607