(20 nodes) RNA polymerase II, core complex, and TFIIS helical bundle-like domain network (Solanum tuberosum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M0ZKU9_SOLTU	Uncharacterized protein. (186 aa)
	RPB1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1839 aa)
	M1A5G9_SOLTU	RPOL4c domain-containing protein. (138 aa)
	M1ADD8_SOLTU	Uncharacterized protein. (228 aa)
	M1AEA3_SOLTU	RNA_pol_L_2 domain-containing protein. (116 aa)
	M1AHN9_SOLTU	Uncharacterized protein. (144 aa)
	M1AU71_SOLTU	Uncharacterized protein. (365 aa)
	M1B8B4_SOLTU	Uncharacterized protein. (244 aa)
	M1BJZ7_SOLTU	RTR1-type domain-containing protein. (662 aa)
	M1BKB4_SOLTU	Uncharacterized protein. (875 aa)
	M1BSI6_SOLTU	Uncharacterized protein. (73 aa)
	M1BVC0_SOLTU	Uncharacterized protein. (167 aa)
	M1BWY7_SOLTU	Uncharacterized protein. (59 aa)
	M1C881_SOLTU	TFIIS N-terminal domain-containing protein. (210 aa)
	M1CDD7_SOLTU	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family. (116 aa)
	M1CLI8_SOLTU	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (114 aa)
	M1CWR0_SOLTU	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1191 aa)
	M1CYD2_SOLTU	Uncharacterized protein. (206 aa)
	M1D1M7_SOLTU	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1254 aa)
	M1DYN3_SOLTU	RPOL4c domain-containing protein. (126 aa)

Your Current Organism:

Solanum tuberosum

NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M0ZKU9_SOLTU	M1A5G9_SOLTU	M0ZKU9	M1A5G9	Uncharacterized protein.	RPOL4c domain-containing protein.	0.859
M0ZKU9_SOLTU	M1ADD8_SOLTU	M0ZKU9	M1ADD8	Uncharacterized protein.	Uncharacterized protein.	0.635
M0ZKU9_SOLTU	M1AEA3_SOLTU	M0ZKU9	M1AEA3	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.960
M0ZKU9_SOLTU	M1AHN9_SOLTU	M0ZKU9	M1AHN9	Uncharacterized protein.	Uncharacterized protein.	0.945
M0ZKU9_SOLTU	M1AU71_SOLTU	M0ZKU9	M1AU71	Uncharacterized protein.	Uncharacterized protein.	0.756
M0ZKU9_SOLTU	M1B8B4_SOLTU	M0ZKU9	M1B8B4	Uncharacterized protein.	Uncharacterized protein.	0.611
M0ZKU9_SOLTU	M1BJZ7_SOLTU	M0ZKU9	M1BJZ7	Uncharacterized protein.	RTR1-type domain-containing protein.	0.917
M0ZKU9_SOLTU	M1BKB4_SOLTU	M0ZKU9	M1BKB4	Uncharacterized protein.	Uncharacterized protein.	0.680
M0ZKU9_SOLTU	M1BSI6_SOLTU	M0ZKU9	M1BSI6	Uncharacterized protein.	Uncharacterized protein.	0.946
M0ZKU9_SOLTU	M1BVC0_SOLTU	M0ZKU9	M1BVC0	Uncharacterized protein.	Uncharacterized protein.	0.468
M0ZKU9_SOLTU	M1BWY7_SOLTU	M0ZKU9	M1BWY7	Uncharacterized protein.	Uncharacterized protein.	0.830
M0ZKU9_SOLTU	M1C881_SOLTU	M0ZKU9	M1C881	Uncharacterized protein.	TFIIS N-terminal domain-containing protein.	0.756
M0ZKU9_SOLTU	M1CDD7_SOLTU	M0ZKU9	M1CDD7	Uncharacterized protein.	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	0.951
M0ZKU9_SOLTU	M1CLI8_SOLTU	M0ZKU9	M1CLI8	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.944
M0ZKU9_SOLTU	M1CWR0_SOLTU	M0ZKU9	M1CWR0	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.635
M0ZKU9_SOLTU	M1CYD2_SOLTU	M0ZKU9	M1CYD2	Uncharacterized protein.	Uncharacterized protein.	0.763
M0ZKU9_SOLTU	M1D1M7_SOLTU	M0ZKU9	M1D1M7	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.611
M0ZKU9_SOLTU	M1DYN3_SOLTU	M0ZKU9	M1DYN3	Uncharacterized protein.	RPOL4c domain-containing protein.	0.859
M0ZKU9_SOLTU	RPB1	M0ZKU9	M0ZVV4	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.563
M1A5G9_SOLTU	M0ZKU9_SOLTU	M1A5G9	M0ZKU9	RPOL4c domain-containing protein.	Uncharacterized protein.	0.859