(5 nodes) Pyridine nucleotide-disulphide oxidoreductase, class I, and 2-oxoacid dehydrogenase acyltransferase, catalytic domain network (Solanum tuberosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M0ZSL5_SOLTU	Uncharacterized protein. (570 aa)
	LPD2	Dihydrolipoyl dehydrogenase. (504 aa)
	M1AJ16_SOLTU	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex. (464 aa)
	M1C5X7_SOLTU	Transket_pyr domain-containing protein. (1019 aa)
	M1CP34_SOLTU	Lipoyl-binding domain-containing protein. (471 aa)

Your Current Organism:

Solanum tuberosum

NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LPD2	M0ZSL5_SOLTU	M1A028	M0ZSL5	Dihydrolipoyl dehydrogenase.	Uncharacterized protein.	0.908
LPD2	M1AJ16_SOLTU	M1A028	M1AJ16	Dihydrolipoyl dehydrogenase.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.993
LPD2	M1C5X7_SOLTU	M1A028	M1C5X7	Dihydrolipoyl dehydrogenase.	Transket_pyr domain-containing protein.	0.988
LPD2	M1CP34_SOLTU	M1A028	M1CP34	Dihydrolipoyl dehydrogenase.	Lipoyl-binding domain-containing protein.	0.998
M0ZSL5_SOLTU	LPD2	M0ZSL5	M1A028	Uncharacterized protein.	Dihydrolipoyl dehydrogenase.	0.908
M0ZSL5_SOLTU	M1AJ16_SOLTU	M0ZSL5	M1AJ16	Uncharacterized protein.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.985
M0ZSL5_SOLTU	M1C5X7_SOLTU	M0ZSL5	M1C5X7	Uncharacterized protein.	Transket_pyr domain-containing protein.	0.988
M0ZSL5_SOLTU	M1CP34_SOLTU	M0ZSL5	M1CP34	Uncharacterized protein.	Lipoyl-binding domain-containing protein.	0.998
M1AJ16_SOLTU	LPD2	M1AJ16	M1A028	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Dihydrolipoyl dehydrogenase.	0.993
M1AJ16_SOLTU	M0ZSL5_SOLTU	M1AJ16	M0ZSL5	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Uncharacterized protein.	0.985
M1AJ16_SOLTU	M1C5X7_SOLTU	M1AJ16	M1C5X7	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Transket_pyr domain-containing protein.	0.961
M1AJ16_SOLTU	M1CP34_SOLTU	M1AJ16	M1CP34	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Lipoyl-binding domain-containing protein.	0.943
M1C5X7_SOLTU	LPD2	M1C5X7	M1A028	Transket_pyr domain-containing protein.	Dihydrolipoyl dehydrogenase.	0.988
M1C5X7_SOLTU	M0ZSL5_SOLTU	M1C5X7	M0ZSL5	Transket_pyr domain-containing protein.	Uncharacterized protein.	0.988
M1C5X7_SOLTU	M1AJ16_SOLTU	M1C5X7	M1AJ16	Transket_pyr domain-containing protein.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.961
M1C5X7_SOLTU	M1CP34_SOLTU	M1C5X7	M1CP34	Transket_pyr domain-containing protein.	Lipoyl-binding domain-containing protein.	0.999
M1CP34_SOLTU	LPD2	M1CP34	M1A028	Lipoyl-binding domain-containing protein.	Dihydrolipoyl dehydrogenase.	0.998
M1CP34_SOLTU	M0ZSL5_SOLTU	M1CP34	M0ZSL5	Lipoyl-binding domain-containing protein.	Uncharacterized protein.	0.998
M1CP34_SOLTU	M1AJ16_SOLTU	M1CP34	M1AJ16	Lipoyl-binding domain-containing protein.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.943
M1CP34_SOLTU	M1C5X7_SOLTU	M1CP34	M1C5X7	Lipoyl-binding domain-containing protein.	Transket_pyr domain-containing protein.	0.999