(31 nodes) Gene silencing by RNA-directed DNA methylation network (Solanum tuberosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M1DAR5_SOLTU	SNF2_N domain-containing protein. (168 aa)
	M1C3T9_SOLTU	Uncharacterized protein. (60 aa)
	M1BZW0_SOLTU	Uncharacterized protein. (1217 aa)
	M1BVM8_SOLTU	HRDC domain-containing protein. (857 aa)
	M1BK86_SOLTU	Uncharacterized protein. (1019 aa)
	M1BEV3_SOLTU	Uncharacterized protein. (919 aa)
	M1B7D3_SOLTU	Uncharacterized protein. (1106 aa)
	M1B5D9_SOLTU	Helicase ATP-binding domain-containing protein. (672 aa)
	M1B489_SOLTU	Uncharacterized protein. (635 aa)
	M1B487_SOLTU	Uncharacterized protein. (198 aa)
	M1AYY1_SOLTU	Helicase C-terminal domain-containing protein. (145 aa)
	M1AIM4_SOLTU	Uncharacterized protein. (73 aa)
	M1A8T6_SOLTU	Uncharacterized protein. (1205 aa)
	M1A8T4_SOLTU	Uncharacterized protein. (623 aa)
	M0ZZA0_SOLTU	Uncharacterized protein. (627 aa)
	M0ZNT1_SOLTU	Uncharacterized protein. (916 aa)
	M0ZNT0_SOLTU	Uncharacterized protein. (995 aa)
	M0ZNQ7_SOLTU	Uncharacterized protein. (892 aa)
	M0ZMM5_SOLTU	Uncharacterized protein. (696 aa)
	M1CFH0_SOLTU	Matrin-type domain-containing protein. (262 aa)
	M1DY63_SOLTU	Helicase C-terminal domain-containing protein. (125 aa)
	M1DX39_SOLTU	FBD domain-containing protein. (370 aa)
	M1DLN5_SOLTU	SNF2_N domain-containing protein. (245 aa)
	M1DGU3_SOLTU	Uncharacterized protein. (189 aa)
	M1C7N3_SOLTU	Uncharacterized protein. (1286 aa)
	M1DAM3_SOLTU	SNF2_N domain-containing protein. (235 aa)
	M1D1X3_SOLTU	Uncharacterized protein. (925 aa)
	M1CZ45_SOLTU	Uncharacterized protein. (760 aa)
	M1CUR7_SOLTU	Uncharacterized protein. (660 aa)
	M1CPN7_SOLTU	XH domain-containing protein. (136 aa)
	M1C9D8_SOLTU	Uncharacterized protein. (638 aa)

Your Current Organism:

Solanum tuberosum

NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M0ZMM5_SOLTU	M1D1X3_SOLTU	M0ZMM5	M1D1X3	Uncharacterized protein.	Uncharacterized protein.	0.427
M0ZZA0_SOLTU	M1BVM8_SOLTU	M0ZZA0	M1BVM8	Uncharacterized protein.	HRDC domain-containing protein.	0.426
M1B487_SOLTU	M1BVM8_SOLTU	M1B487	M1BVM8	Uncharacterized protein.	HRDC domain-containing protein.	0.426
M1B489_SOLTU	M1BVM8_SOLTU	M1B489	M1BVM8	Uncharacterized protein.	HRDC domain-containing protein.	0.426
M1BK86_SOLTU	M1CFH0_SOLTU	M1BK86	M1CFH0	Uncharacterized protein.	Matrin-type domain-containing protein.	0.952
M1BVM8_SOLTU	M0ZZA0_SOLTU	M1BVM8	M0ZZA0	HRDC domain-containing protein.	Uncharacterized protein.	0.426
M1BVM8_SOLTU	M1B487_SOLTU	M1BVM8	M1B487	HRDC domain-containing protein.	Uncharacterized protein.	0.426
M1BVM8_SOLTU	M1B489_SOLTU	M1BVM8	M1B489	HRDC domain-containing protein.	Uncharacterized protein.	0.426
M1BVM8_SOLTU	M1C9D8_SOLTU	M1BVM8	M1C9D8	HRDC domain-containing protein.	Uncharacterized protein.	0.426
M1BVM8_SOLTU	M1CPN7_SOLTU	M1BVM8	M1CPN7	HRDC domain-containing protein.	XH domain-containing protein.	0.426
M1BVM8_SOLTU	M1CZ45_SOLTU	M1BVM8	M1CZ45	HRDC domain-containing protein.	Uncharacterized protein.	0.408
M1C9D8_SOLTU	M1BVM8_SOLTU	M1C9D8	M1BVM8	Uncharacterized protein.	HRDC domain-containing protein.	0.426
M1CFH0_SOLTU	M1BK86_SOLTU	M1CFH0	M1BK86	Matrin-type domain-containing protein.	Uncharacterized protein.	0.952
M1CPN7_SOLTU	M1BVM8_SOLTU	M1CPN7	M1BVM8	XH domain-containing protein.	HRDC domain-containing protein.	0.426
M1CUR7_SOLTU	M1D1X3_SOLTU	M1CUR7	M1D1X3	Uncharacterized protein.	Uncharacterized protein.	0.427
M1CZ45_SOLTU	M1BVM8_SOLTU	M1CZ45	M1BVM8	Uncharacterized protein.	HRDC domain-containing protein.	0.408
M1D1X3_SOLTU	M0ZMM5_SOLTU	M1D1X3	M0ZMM5	Uncharacterized protein.	Uncharacterized protein.	0.427
M1D1X3_SOLTU	M1CUR7_SOLTU	M1D1X3	M1CUR7	Uncharacterized protein.	Uncharacterized protein.	0.427