30 items (Solanum tuberosum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M1ACR8_SOLTU	Uncharacterized protein. (89 aa)
	M0ZGV6_SOLTU	RING-type domain-containing protein. (256 aa)
	M1ACN2_SOLTU	Uncharacterized protein. (223 aa)
	M1ADF1_SOLTU	Uncharacterized protein. (246 aa)
	M1AG20_SOLTU	Photolyase/cryptochrome alpha/beta domain-containing protein. (583 aa)
	M1ALX8_SOLTU	Uncharacterized protein. (174 aa)
	M1APZ6_SOLTU	Uncharacterized protein. (386 aa)
	M1APZ7_SOLTU	Uncharacterized protein. (402 aa)
	M1B0P2_SOLTU	Uncharacterized protein. (330 aa)
	M1B2S9_SOLTU	Protein kinase domain-containing protein. (343 aa)
	M1B473_SOLTU	Uncharacterized protein. (1125 aa)
	GAI	GRAS domain-containing protein; Belongs to the GRAS family. (588 aa)
	M1BFT9_SOLTU	Photolyase/cryptochrome alpha/beta domain-containing protein. (647 aa)
	M1BH72_SOLTU	Uncharacterized protein. (227 aa)
	M1BII8_SOLTU	Uncharacterized protein. (224 aa)
	M1BN26_SOLTU	Uncharacterized protein. (206 aa)
	M1BNR8_SOLTU	GRAS domain-containing protein; Belongs to the GRAS family. (421 aa)
	M1BNR9_SOLTU	Uncharacterized protein. (174 aa)
	M1BNS1_SOLTU	GRAS domain-containing protein; Belongs to the GRAS family. (510 aa)
	M1BRC1_SOLTU	Potassium transporter; Potassium transporter; Belongs to the HAK/KUP transporter (TC 2.A.72.3) family. (763 aa)
	M1BRD9_SOLTU	Uncharacterized protein. (578 aa)
	M1BYJ4_SOLTU	Uncharacterized protein. (170 aa)
	M1C0S0_SOLTU	Uncharacterized protein. (166 aa)
	M1C327_SOLTU	IPPc domain-containing protein. (255 aa)
	M1C3N5_SOLTU	Uncharacterized protein. (112 aa)
	M1CAZ6_SOLTU	Uncharacterized protein. (483 aa)
	M1CG52_SOLTU	S-acyltransferase; Belongs to the DHHC palmitoyltransferase family. (302 aa)
	M1CK89_SOLTU	IPPc domain-containing protein. (327 aa)
	M1CLG1_SOLTU	Uncharacterized protein. (91 aa)
	M1D112_SOLTU	Uncharacterized protein. (160 aa)

Your Current Organism:

Solanum tuberosum

NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GAI	M1BNS1_SOLTU	M1BA42	M1BNS1	GRAS domain-containing protein; Belongs to the GRAS family.	GRAS domain-containing protein; Belongs to the GRAS family.	0.900
M1AG20_SOLTU	M1BFT9_SOLTU	M1AG20	M1BFT9	Photolyase/cryptochrome alpha/beta domain-containing protein.	Photolyase/cryptochrome alpha/beta domain-containing protein.	0.921
M1APZ6_SOLTU	M1APZ7_SOLTU	M1APZ6	M1APZ7	Uncharacterized protein.	Uncharacterized protein.	0.777
M1APZ6_SOLTU	M1CAZ6_SOLTU	M1APZ6	M1CAZ6	Uncharacterized protein.	Uncharacterized protein.	0.540
M1APZ7_SOLTU	M1APZ6_SOLTU	M1APZ7	M1APZ6	Uncharacterized protein.	Uncharacterized protein.	0.777
M1APZ7_SOLTU	M1CAZ6_SOLTU	M1APZ7	M1CAZ6	Uncharacterized protein.	Uncharacterized protein.	0.553
M1BFT9_SOLTU	M1AG20_SOLTU	M1BFT9	M1AG20	Photolyase/cryptochrome alpha/beta domain-containing protein.	Photolyase/cryptochrome alpha/beta domain-containing protein.	0.921
M1BNS1_SOLTU	GAI	M1BNS1	M1BA42	GRAS domain-containing protein; Belongs to the GRAS family.	GRAS domain-containing protein; Belongs to the GRAS family.	0.900
M1CAZ6_SOLTU	M1APZ6_SOLTU	M1CAZ6	M1APZ6	Uncharacterized protein.	Uncharacterized protein.	0.540
M1CAZ6_SOLTU	M1APZ7_SOLTU	M1CAZ6	M1APZ7	Uncharacterized protein.	Uncharacterized protein.	0.553