(22 nodes) Cytoplasmic stress granule network (Solanum tuberosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M0ZGX0_SOLTU	2-Hacid_dh_C domain-containing protein. (631 aa)
	M0ZMB2_SOLTU	Uncharacterized protein. (469 aa)
	M0ZSS6_SOLTU	3'-5' exonuclease domain-containing protein. (501 aa)
	M1A1C9_SOLTU	PAM2 domain-containing protein. (202 aa)
	M1A3G8_SOLTU	Uncharacterized protein. (106 aa)
	M1ABH1_SOLTU	Uncharacterized protein. (418 aa)
	M1ADU0_SOLTU	Uncharacterized protein. (396 aa)
	LOS4	Uncharacterized protein. (514 aa)
	M1AK36_SOLTU	Uncharacterized protein. (75 aa)
	M1AQK1_SOLTU	CoA carboxyltransferase C-terminal domain-containing protein. (92 aa)
	M1AUM7_SOLTU	Uncharacterized protein. (102 aa)
	M1B657_SOLTU	Uncharacterized protein. (293 aa)
	M1BCI6_SOLTU	CoA carboxyltransferase C-terminal domain-containing protein. (89 aa)
	M1BSG7_SOLTU	Uncharacterized protein. (463 aa)
	M1BUK4_SOLTU	NTF2 domain-containing protein. (256 aa)
	M1C166_SOLTU	SM-ATX domain-containing protein. (507 aa)
	M1C2F9_SOLTU	Uncharacterized protein. (1156 aa)
	M1CFY2_SOLTU	Uncharacterized protein. (420 aa)
	M1CLB1_SOLTU	Uncharacterized protein. (679 aa)
	M1CM00_SOLTU	DEAD domain-containing protein. (336 aa)
	M1CZB2_SOLTU	Uncharacterized protein. (668 aa)
	Q3HRX0_SOLTU	Uncharacterized protein. (105 aa)

Your Current Organism:

Solanum tuberosum

NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOS4	M1C2F9_SOLTU	M1AG92	M1C2F9	Uncharacterized protein.	Uncharacterized protein.	0.419
M0ZMB2_SOLTU	M1A1C9_SOLTU	M0ZMB2	M1A1C9	Uncharacterized protein.	PAM2 domain-containing protein.	0.511
M1A1C9_SOLTU	M0ZMB2_SOLTU	M1A1C9	M0ZMB2	PAM2 domain-containing protein.	Uncharacterized protein.	0.511
M1A1C9_SOLTU	M1A3G8_SOLTU	M1A1C9	M1A3G8	PAM2 domain-containing protein.	Uncharacterized protein.	0.875
M1A1C9_SOLTU	M1AQK1_SOLTU	M1A1C9	M1AQK1	PAM2 domain-containing protein.	CoA carboxyltransferase C-terminal domain-containing protein.	0.875
M1A1C9_SOLTU	M1AUM7_SOLTU	M1A1C9	M1AUM7	PAM2 domain-containing protein.	Uncharacterized protein.	0.875
M1A1C9_SOLTU	M1BCI6_SOLTU	M1A1C9	M1BCI6	PAM2 domain-containing protein.	CoA carboxyltransferase C-terminal domain-containing protein.	0.875
M1A1C9_SOLTU	M1BSG7_SOLTU	M1A1C9	M1BSG7	PAM2 domain-containing protein.	Uncharacterized protein.	0.511
M1A1C9_SOLTU	M1BUK4_SOLTU	M1A1C9	M1BUK4	PAM2 domain-containing protein.	NTF2 domain-containing protein.	0.511
M1A3G8_SOLTU	M1A1C9_SOLTU	M1A3G8	M1A1C9	Uncharacterized protein.	PAM2 domain-containing protein.	0.875
M1AQK1_SOLTU	M1A1C9_SOLTU	M1AQK1	M1A1C9	CoA carboxyltransferase C-terminal domain-containing protein.	PAM2 domain-containing protein.	0.875
M1AUM7_SOLTU	M1A1C9_SOLTU	M1AUM7	M1A1C9	Uncharacterized protein.	PAM2 domain-containing protein.	0.875
M1BCI6_SOLTU	M1A1C9_SOLTU	M1BCI6	M1A1C9	CoA carboxyltransferase C-terminal domain-containing protein.	PAM2 domain-containing protein.	0.875
M1BSG7_SOLTU	M1A1C9_SOLTU	M1BSG7	M1A1C9	Uncharacterized protein.	PAM2 domain-containing protein.	0.511
M1BUK4_SOLTU	M1A1C9_SOLTU	M1BUK4	M1A1C9	NTF2 domain-containing protein.	PAM2 domain-containing protein.	0.511
M1C2F9_SOLTU	LOS4	M1C2F9	M1AG92	Uncharacterized protein.	Uncharacterized protein.	0.419