(5 nodes) HRDC-like superfamily network (Solanum tuberosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M1C762_SOLTU	HRDC domain-containing protein. (298 aa)
	M1BVM8_SOLTU	HRDC domain-containing protein. (857 aa)
	M1A5G9_SOLTU	RPOL4c domain-containing protein. (138 aa)
	M1DYN3_SOLTU	RPOL4c domain-containing protein. (126 aa)
	M1CLX8_SOLTU	RPOL4c domain-containing protein. (173 aa)

Your Current Organism:

Solanum tuberosum

NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M1A5G9_SOLTU	M1CLX8_SOLTU	M1A5G9	M1CLX8	RPOL4c domain-containing protein.	RPOL4c domain-containing protein.	0.600
M1A5G9_SOLTU	M1DYN3_SOLTU	M1A5G9	M1DYN3	RPOL4c domain-containing protein.	RPOL4c domain-containing protein.	0.902
M1CLX8_SOLTU	M1A5G9_SOLTU	M1CLX8	M1A5G9	RPOL4c domain-containing protein.	RPOL4c domain-containing protein.	0.600
M1CLX8_SOLTU	M1DYN3_SOLTU	M1CLX8	M1DYN3	RPOL4c domain-containing protein.	RPOL4c domain-containing protein.	0.600
M1DYN3_SOLTU	M1A5G9_SOLTU	M1DYN3	M1A5G9	RPOL4c domain-containing protein.	RPOL4c domain-containing protein.	0.902
M1DYN3_SOLTU	M1CLX8_SOLTU	M1DYN3	M1CLX8	RPOL4c domain-containing protein.	RPOL4c domain-containing protein.	0.600