(56 nodes) RNA Polymerase I Promoter Clearance network (Solanum tuberosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M1BAA8_SOLTU	Uncharacterized protein. (663 aa)
	M1CT05_SOLTU	Histone domain-containing protein; Belongs to the histone H2B family. (381 aa)
	GTF2H2	VWFA domain-containing protein. (245 aa)
	M1CM34_SOLTU	Histone H2B; Belongs to the histone H2B family. (142 aa)
	M1CM33_SOLTU	Histone H2B; Belongs to the histone H2B family. (144 aa)
	M1CLS3_SOLTU	SANTA domain-containing protein. (685 aa)
	M1CLS1_SOLTU	SANTA domain-containing protein. (441 aa)
	M1CLJ4_SOLTU	Uncharacterized protein. (207 aa)
	M1CKG2_SOLTU	Uncharacterized protein. (290 aa)
	M1CJL7_SOLTU	Uncharacterized protein. (728 aa)
	M1CAQ9_SOLTU	CYCLIN domain-containing protein; Belongs to the cyclin family. (335 aa)
	M1C8B3_SOLTU	MAT1 domain-containing protein. (188 aa)
	M1C6T9_SOLTU	Uncharacterized protein. (226 aa)
	M1C576_SOLTU	Histone H2B; Belongs to the histone H2B family. (147 aa)
	M1C2I7_SOLTU	Uncharacterized protein. (182 aa)
	M1C1U6_SOLTU	RNA_pol_Rpb5_N domain-containing protein. (97 aa)
	M1C1U5_SOLTU	RNA_pol_Rpb5_C domain-containing protein. (99 aa)
	M1C1Q1_SOLTU	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (175 aa)
	M1BZS0_SOLTU	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (121 aa)
	M1BWY7_SOLTU	Uncharacterized protein. (59 aa)
	M1BWQ2_SOLTU	Integrase catalytic domain-containing protein. (126 aa)
	M1BSI6_SOLTU	Uncharacterized protein. (73 aa)
	M1BRS4_SOLTU	Uncharacterized protein. (206 aa)
	M1BNA4_SOLTU	Uncharacterized protein. (70 aa)
	M1BN56_SOLTU	Uncharacterized protein. (104 aa)
	M1BEW2_SOLTU	Histone H2B; Belongs to the histone H2B family. (141 aa)
	M1BCD9_SOLTU	Uncharacterized protein. (431 aa)
	M1CT06_SOLTU	Histone domain-containing protein; Belongs to the histone H2B family. (135 aa)
	M1B8D7_SOLTU	Uncharacterized protein. (561 aa)
	M1B8D4_SOLTU	Myb-like domain-containing protein. (274 aa)
	M1B2G3_SOLTU	Uncharacterized protein. (85 aa)
	M1AWX3_SOLTU	Uncharacterized protein. (731 aa)
	M1AV00_SOLTU	Uncharacterized protein. (655 aa)
	M1APX5_SOLTU	Uncharacterized protein. (227 aa)
	M1AK84_SOLTU	CYCLIN domain-containing protein; Belongs to the cyclin family. (327 aa)
	M1AHN9_SOLTU	Uncharacterized protein. (144 aa)
	M1AH90_SOLTU	SANTA domain-containing protein. (514 aa)
	M1AG69_SOLTU	Histone H2B; Belongs to the histone H2B family. (144 aa)
	M1AG47_SOLTU	Histone H2B; Belongs to the histone H2B family. (144 aa)
	M1AFQ3_SOLTU	Uncharacterized protein. (231 aa)
	M1AAN4_SOLTU	Histone H2B; Belongs to the histone H2B family. (142 aa)
	M1AAH8_SOLTU	Histone domain-containing protein; Belongs to the histone H2B family. (273 aa)
	M1A270_SOLTU	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family. (145 aa)
	M1A106_SOLTU	WAT1-related protein. (267 aa)
	M1A0B5_SOLTU	Uncharacterized protein. (467 aa)
	M0ZXG6_SOLTU	Uncharacterized protein. (70 aa)
	M0ZR13_SOLTU	Uncharacterized protein. (180 aa)
	M0ZNI9_SOLTU	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family. (144 aa)
	M0ZHX8_SOLTU	Histone H2B; Belongs to the histone H2B family. (142 aa)
	M1CUG9_SOLTU	Histone H2B; Belongs to the histone H2B family. (147 aa)
	M1CX25_SOLTU	RPOLD domain-containing protein. (393 aa)
	M1CYD2_SOLTU	Uncharacterized protein. (206 aa)
	M1DYC1_SOLTU	Histone domain-containing protein; Belongs to the histone H2B family. (121 aa)
	TBP	TATA-box-binding protein; General transcription factor that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre-initiation complex (PIC), playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II. (200 aa)
	Q2XPW1_SOLTU	Histone H2B; Belongs to the histone H2B family. (146 aa)
	Q2XTD8_SOLTU	Histone H2B; Belongs to the histone H2B family. (143 aa)

Your Current Organism:

Solanum tuberosum

NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GTF2H2	M0ZNI9_SOLTU	M1CP91	M0ZNI9	VWFA domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	0.951
GTF2H2	M0ZXG6_SOLTU	M1CP91	M0ZXG6	VWFA domain-containing protein.	Uncharacterized protein.	0.982
GTF2H2	M1A0B5_SOLTU	M1CP91	M1A0B5	VWFA domain-containing protein.	Uncharacterized protein.	0.964
GTF2H2	M1A270_SOLTU	M1CP91	M1A270	VWFA domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	0.951
GTF2H2	M1AFQ3_SOLTU	M1CP91	M1AFQ3	VWFA domain-containing protein.	Uncharacterized protein.	0.747
GTF2H2	M1AH90_SOLTU	M1CP91	M1AH90	VWFA domain-containing protein.	SANTA domain-containing protein.	0.915
GTF2H2	M1AHN9_SOLTU	M1CP91	M1AHN9	VWFA domain-containing protein.	Uncharacterized protein.	0.979
GTF2H2	M1AK84_SOLTU	M1CP91	M1AK84	VWFA domain-containing protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.988
GTF2H2	M1APX5_SOLTU	M1CP91	M1APX5	VWFA domain-containing protein.	Uncharacterized protein.	0.902
GTF2H2	M1AWX3_SOLTU	M1CP91	M1AWX3	VWFA domain-containing protein.	Uncharacterized protein.	0.982
GTF2H2	M1BAA8_SOLTU	M1CP91	M1BAA8	VWFA domain-containing protein.	Uncharacterized protein.	0.964
GTF2H2	M1BN56_SOLTU	M1CP91	M1BN56	VWFA domain-containing protein.	Uncharacterized protein.	0.747
GTF2H2	M1BNA4_SOLTU	M1CP91	M1BNA4	VWFA domain-containing protein.	Uncharacterized protein.	0.982
GTF2H2	M1BRS4_SOLTU	M1CP91	M1BRS4	VWFA domain-containing protein.	Uncharacterized protein.	0.902
GTF2H2	M1BSI6_SOLTU	M1CP91	M1BSI6	VWFA domain-containing protein.	Uncharacterized protein.	0.980
GTF2H2	M1BWY7_SOLTU	M1CP91	M1BWY7	VWFA domain-containing protein.	Uncharacterized protein.	0.915
GTF2H2	M1BZS0_SOLTU	M1CP91	M1BZS0	VWFA domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.937
GTF2H2	M1C1Q1_SOLTU	M1CP91	M1C1Q1	VWFA domain-containing protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.997
GTF2H2	M1C1U5_SOLTU	M1CP91	M1C1U5	VWFA domain-containing protein.	RNA_pol_Rpb5_C domain-containing protein.	0.902
GTF2H2	M1C1U6_SOLTU	M1CP91	M1C1U6	VWFA domain-containing protein.	RNA_pol_Rpb5_N domain-containing protein.	0.902