(39 nodes) RNA Polymerase III Transcription network (Solanum tuberosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M1CX25_SOLTU	RPOLD domain-containing protein. (393 aa)
	M0ZNI9_SOLTU	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family. (144 aa)
	M0ZWZ5_SOLTU	Uncharacterized protein. (241 aa)
	M0ZZ62_SOLTU	Uncharacterized protein. (526 aa)
	M1A0T2_SOLTU	Uncharacterized protein. (657 aa)
	M1A270_SOLTU	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family. (145 aa)
	M1AAZ1_SOLTU	Uncharacterized protein. (368 aa)
	M1ACG2_SOLTU	Uncharacterized protein. (237 aa)
	M1AD04_SOLTU	Uncharacterized protein. (157 aa)
	M1AH90_SOLTU	SANTA domain-containing protein. (514 aa)
	M1AHN9_SOLTU	Uncharacterized protein. (144 aa)
	M1AHV4_SOLTU	Uncharacterized protein. (611 aa)
	M1APX5_SOLTU	Uncharacterized protein. (227 aa)
	M1AR08_SOLTU	Uncharacterized protein. (286 aa)
	M1AS33_SOLTU	Uncharacterized protein. (204 aa)
	M1ATE0_SOLTU	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1153 aa)
	M1ATE1_SOLTU	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1151 aa)
	M1AYI8_SOLTU	Uncharacterized protein. (205 aa)
	M1B6K5_SOLTU	BRF1 domain-containing protein. (220 aa)
	M1B955_SOLTU	ENDO3c domain-containing protein. (362 aa)
	M1BI38_SOLTU	SANT domain-containing protein. (714 aa)
	M1BRS4_SOLTU	Uncharacterized protein. (206 aa)
	M1BSI6_SOLTU	Uncharacterized protein. (73 aa)
	M1BWY7_SOLTU	Uncharacterized protein. (59 aa)
	M1BXC7_SOLTU	Uncharacterized protein. (87 aa)
	M1C1U5_SOLTU	RNA_pol_Rpb5_C domain-containing protein. (99 aa)
	M1C1U6_SOLTU	RNA_pol_Rpb5_N domain-containing protein. (97 aa)
	M1C397_SOLTU	Uncharacterized protein. (743 aa)
	M1C5M6_SOLTU	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (111 aa)
	M1C6T9_SOLTU	Uncharacterized protein. (226 aa)
	M1CDL5_SOLTU	Uncharacterized protein. (58 aa)
	M1CDL6_SOLTU	Uncharacterized protein. (60 aa)
	M1CLJ4_SOLTU	Uncharacterized protein. (207 aa)
	M1CLS1_SOLTU	SANTA domain-containing protein. (441 aa)
	M1CLS3_SOLTU	SANTA domain-containing protein. (685 aa)
	M1CLX8_SOLTU	RPOL4c domain-containing protein. (173 aa)
	M1CYD2_SOLTU	Uncharacterized protein. (206 aa)
	M1D6Q9_SOLTU	Uncharacterized protein. (322 aa)
	TBP	TATA-box-binding protein; General transcription factor that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre-initiation complex (PIC), playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II. (200 aa)

Your Current Organism:

Solanum tuberosum

NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M0ZNI9_SOLTU	M0ZWZ5_SOLTU	M0ZNI9	M0ZWZ5	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	Uncharacterized protein.	0.985
M0ZNI9_SOLTU	M0ZZ62_SOLTU	M0ZNI9	M0ZZ62	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	Uncharacterized protein.	0.834
M0ZNI9_SOLTU	M1A0T2_SOLTU	M0ZNI9	M1A0T2	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	Uncharacterized protein.	0.981
M0ZNI9_SOLTU	M1A270_SOLTU	M0ZNI9	M1A270	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	0.904
M0ZNI9_SOLTU	M1AAZ1_SOLTU	M0ZNI9	M1AAZ1	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	Uncharacterized protein.	0.983
M0ZNI9_SOLTU	M1ACG2_SOLTU	M0ZNI9	M1ACG2	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	Uncharacterized protein.	0.985
M0ZNI9_SOLTU	M1AH90_SOLTU	M0ZNI9	M1AH90	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	SANTA domain-containing protein.	0.936
M0ZNI9_SOLTU	M1AHN9_SOLTU	M0ZNI9	M1AHN9	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	Uncharacterized protein.	0.994
M0ZNI9_SOLTU	M1APX5_SOLTU	M0ZNI9	M1APX5	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	Uncharacterized protein.	0.946
M0ZNI9_SOLTU	M1AR08_SOLTU	M0ZNI9	M1AR08	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	Uncharacterized protein.	0.983
M0ZNI9_SOLTU	M1AS33_SOLTU	M0ZNI9	M1AS33	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	Uncharacterized protein.	0.992
M0ZNI9_SOLTU	M1ATE0_SOLTU	M0ZNI9	M1ATE0	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.982
M0ZNI9_SOLTU	M1ATE1_SOLTU	M0ZNI9	M1ATE1	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.982
M0ZNI9_SOLTU	M1AYI8_SOLTU	M0ZNI9	M1AYI8	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	Uncharacterized protein.	0.960
M0ZNI9_SOLTU	M1B6K5_SOLTU	M0ZNI9	M1B6K5	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	BRF1 domain-containing protein.	0.834
M0ZNI9_SOLTU	M1BI38_SOLTU	M0ZNI9	M1BI38	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	SANT domain-containing protein.	0.926
M0ZNI9_SOLTU	M1BRS4_SOLTU	M0ZNI9	M1BRS4	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	Uncharacterized protein.	0.974
M0ZNI9_SOLTU	M1BSI6_SOLTU	M0ZNI9	M1BSI6	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	Uncharacterized protein.	0.992
M0ZNI9_SOLTU	M1BWY7_SOLTU	M0ZNI9	M1BWY7	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	Uncharacterized protein.	0.969
M0ZNI9_SOLTU	M1BXC7_SOLTU	M0ZNI9	M1BXC7	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	Uncharacterized protein.	0.834