37 items (Solanum tuberosum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M0ZHR2_SOLTU	Peptidase_S26 domain-containing protein. (304 aa)
	M0ZHU3_SOLTU	Uncharacterized protein. (448 aa)
	M0ZI30_SOLTU	Uncharacterized protein. (261 aa)
	M0ZIW6_SOLTU	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily. (497 aa)
	M0ZKT9_SOLTU	SECA_MOTOR_DEAD domain-containing protein. (623 aa)
	M0ZS50_SOLTU	SEC63 domain-containing protein. (265 aa)
	M1A0K5_SOLTU	Signal recognition particle 9 kDa protein; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding. (105 aa)
	M1A566_SOLTU	Uncharacterized protein. (443 aa)
	M1A644_SOLTU	SecA_SW domain-containing protein. (320 aa)
	M1A9W3_SOLTU	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum. (84 aa)
	M1AAA4_SOLTU	Peptidase_S24 domain-containing protein. (123 aa)
	M1ADI7_SOLTU	SRP54 domain-containing protein. (619 aa)
	M1AF47_SOLTU	Peptidase_S24 domain-containing protein. (169 aa)
	M1AFT8_SOLTU	Peptidase_S24 domain-containing protein. (168 aa)
	M1AHD8_SOLTU	SRP54 domain-containing protein. (559 aa)
	M1AKC5_SOLTU	SEC63 domain-containing protein. (443 aa)
	M1AQ69_SOLTU	Uncharacterized protein. (360 aa)
	M1AQC2_SOLTU	Uncharacterized protein. (529 aa)
	M1AUC0_SOLTU	Peptidase_S26 domain-containing protein. (373 aa)
	M1AVZ2_SOLTU	Uncharacterized protein. (135 aa)
	BiP	Uncharacterized protein; Belongs to the heat shock protein 70 family. (667 aa)
	M1B835_SOLTU	Uncharacterized protein. (69 aa)
	M1B992_SOLTU	Uncharacterized protein. (495 aa)
	M1BCD5_SOLTU	Uncharacterized protein. (125 aa)
	M1BLB0_SOLTU	Uncharacterized protein; Belongs to the heat shock protein 70 family. (668 aa)
	M1BR90_SOLTU	Uncharacterized protein. (78 aa)
	M1BWU4_SOLTU	Plug_translocon domain-containing protein; Belongs to the SecY/SEC61-alpha family. (475 aa)
	M1C8C5_SOLTU	Uncharacterized protein. (374 aa)
	M1CAS5_SOLTU	Uncharacterized protein; Belongs to the heat shock protein 70 family. (669 aa)
	M1CCJ2_SOLTU	Uncharacterized protein. (191 aa)
	M1CKS0_SOLTU	Uncharacterized protein. (69 aa)
	M1CMI6_SOLTU	Uncharacterized protein. (538 aa)
	M1CNP0_SOLTU	SRP54 domain-containing protein. (368 aa)
	M1CRG7_SOLTU	Plug_translocon domain-containing protein; Belongs to the SecY/SEC61-alpha family. (475 aa)
	M1CSE0_SOLTU	Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family. (167 aa)
	M1CSH6_SOLTU	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily. (499 aa)
	M1D0A0_SOLTU	Uncharacterized protein. (351 aa)

Your Current Organism:

Solanum tuberosum

NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BiP	M0ZS50_SOLTU	M1AWJ2	M0ZS50	Uncharacterized protein; Belongs to the heat shock protein 70 family.	SEC63 domain-containing protein.	0.795
BiP	M1AKC5_SOLTU	M1AWJ2	M1AKC5	Uncharacterized protein; Belongs to the heat shock protein 70 family.	SEC63 domain-containing protein.	0.795
BiP	M1BLB0_SOLTU	M1AWJ2	M1BLB0	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.901
BiP	M1BWU4_SOLTU	M1AWJ2	M1BWU4	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Plug_translocon domain-containing protein; Belongs to the SecY/SEC61-alpha family.	0.572
BiP	M1CAS5_SOLTU	M1AWJ2	M1CAS5	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.902
BiP	M1CRG7_SOLTU	M1AWJ2	M1CRG7	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Plug_translocon domain-containing protein; Belongs to the SecY/SEC61-alpha family.	0.572
M0ZHR2_SOLTU	M1AUC0_SOLTU	M0ZHR2	M1AUC0	Peptidase_S26 domain-containing protein.	Peptidase_S26 domain-containing protein.	0.905
M0ZHR2_SOLTU	M1CSE0_SOLTU	M0ZHR2	M1CSE0	Peptidase_S26 domain-containing protein.	Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family.	0.887
M0ZHU3_SOLTU	M1A566_SOLTU	M0ZHU3	M1A566	Uncharacterized protein.	Uncharacterized protein.	0.938
M0ZHU3_SOLTU	M1AHD8_SOLTU	M0ZHU3	M1AHD8	Uncharacterized protein.	SRP54 domain-containing protein.	0.589
M0ZHU3_SOLTU	M1AQC2_SOLTU	M0ZHU3	M1AQC2	Uncharacterized protein.	Uncharacterized protein.	0.932
M0ZHU3_SOLTU	M1BWU4_SOLTU	M0ZHU3	M1BWU4	Uncharacterized protein.	Plug_translocon domain-containing protein; Belongs to the SecY/SEC61-alpha family.	0.761
M0ZHU3_SOLTU	M1CMI6_SOLTU	M0ZHU3	M1CMI6	Uncharacterized protein.	Uncharacterized protein.	0.895
M0ZHU3_SOLTU	M1CNP0_SOLTU	M0ZHU3	M1CNP0	Uncharacterized protein.	SRP54 domain-containing protein.	0.697
M0ZHU3_SOLTU	M1CRG7_SOLTU	M0ZHU3	M1CRG7	Uncharacterized protein.	Plug_translocon domain-containing protein; Belongs to the SecY/SEC61-alpha family.	0.761
M0ZI30_SOLTU	M0ZIW6_SOLTU	M0ZI30	M0ZIW6	Uncharacterized protein.	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	0.828
M0ZI30_SOLTU	M1A0K5_SOLTU	M0ZI30	M1A0K5	Uncharacterized protein.	Signal recognition particle 9 kDa protein; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding.	0.882
M0ZI30_SOLTU	M1ADI7_SOLTU	M0ZI30	M1ADI7	Uncharacterized protein.	SRP54 domain-containing protein.	0.983
M0ZI30_SOLTU	M1AHD8_SOLTU	M0ZI30	M1AHD8	Uncharacterized protein.	SRP54 domain-containing protein.	0.828
M0ZI30_SOLTU	M1AVZ2_SOLTU	M0ZI30	M1AVZ2	Uncharacterized protein.	Uncharacterized protein.	0.909