(31 nodes) Homologous recombination network (Solanum tuberosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M0ZNT0_SOLTU	Uncharacterized protein. (995 aa)
	M0ZS34_SOLTU	Metallophos domain-containing protein. (304 aa)
	M1A8T6_SOLTU	Uncharacterized protein. (1205 aa)
	M1A9Z5_SOLTU	RECA_2 domain-containing protein. (365 aa)
	M1AHF0_SOLTU	Uncharacterized protein. (106 aa)
	M1AI15_SOLTU	Uncharacterized protein. (1214 aa)
	M1ALZ5_SOLTU	Uncharacterized protein. (378 aa)
	M1B2V0_SOLTU	Uncharacterized protein. (272 aa)
	M1B3C1_SOLTU	POLAc domain-containing protein. (1119 aa)
	M1B5D9_SOLTU	Helicase ATP-binding domain-containing protein. (672 aa)
	M1B6E8_SOLTU	Uncharacterized protein. (705 aa)
	M1BDQ9_SOLTU	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (547 aa)
	M1BH01_SOLTU	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (234 aa)
	M1BNC4_SOLTU	Uncharacterized protein. (133 aa)
	M1BQS0_SOLTU	Uncharacterized protein. (74 aa)
	M1BTS1_SOLTU	RECA_2 domain-containing protein. (287 aa)
	M1C030_SOLTU	Uncharacterized protein; Belongs to the RecA family. (419 aa)
	M1C762_SOLTU	HRDC domain-containing protein. (298 aa)
	M1C7N3_SOLTU	Uncharacterized protein. (1286 aa)
	M1C9T2_SOLTU	Uncharacterized protein. (74 aa)
	M1CDR6_SOLTU	RECA_2 domain-containing protein. (219 aa)
	M1CQ28_SOLTU	Uncharacterized protein. (280 aa)
	M1CRX6_SOLTU	JAB_MPN domain-containing protein. (87 aa)
	M1CV03_SOLTU	Uncharacterized protein. (260 aa)
	M1CWA2_SOLTU	Uncharacterized protein. (120 aa)
	M1CZW2_SOLTU	Helicase C-terminal domain-containing protein. (221 aa)
	M1D1K1_SOLTU	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (905 aa)
	M1D1X3_SOLTU	Uncharacterized protein. (925 aa)
	M1D420_SOLTU	Uncharacterized protein. (139 aa)
	M1D4E2_SOLTU	Uncharacterized protein. (159 aa)
	M1DQV8_SOLTU	Uncharacterized protein. (127 aa)

Your Current Organism:

Solanum tuberosum

NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M0ZNT0_SOLTU	M1A9Z5_SOLTU	M0ZNT0	M1A9Z5	Uncharacterized protein.	RECA_2 domain-containing protein.	0.464
M0ZS34_SOLTU	M1A9Z5_SOLTU	M0ZS34	M1A9Z5	Metallophos domain-containing protein.	RECA_2 domain-containing protein.	0.757
M0ZS34_SOLTU	M1AI15_SOLTU	M0ZS34	M1AI15	Metallophos domain-containing protein.	Uncharacterized protein.	0.715
M0ZS34_SOLTU	M1B2V0_SOLTU	M0ZS34	M1B2V0	Metallophos domain-containing protein.	Uncharacterized protein.	0.617
M0ZS34_SOLTU	M1B3C1_SOLTU	M0ZS34	M1B3C1	Metallophos domain-containing protein.	POLAc domain-containing protein.	0.651
M0ZS34_SOLTU	M1B6E8_SOLTU	M0ZS34	M1B6E8	Metallophos domain-containing protein.	Uncharacterized protein.	0.834
M0ZS34_SOLTU	M1BDQ9_SOLTU	M0ZS34	M1BDQ9	Metallophos domain-containing protein.	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.	0.613
M0ZS34_SOLTU	M1BH01_SOLTU	M0ZS34	M1BH01	Metallophos domain-containing protein.	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.	0.603
M0ZS34_SOLTU	M1BTS1_SOLTU	M0ZS34	M1BTS1	Metallophos domain-containing protein.	RECA_2 domain-containing protein.	0.829
M0ZS34_SOLTU	M1C030_SOLTU	M0ZS34	M1C030	Metallophos domain-containing protein.	Uncharacterized protein; Belongs to the RecA family.	0.574
M0ZS34_SOLTU	M1C762_SOLTU	M0ZS34	M1C762	Metallophos domain-containing protein.	HRDC domain-containing protein.	0.715
M0ZS34_SOLTU	M1CDR6_SOLTU	M0ZS34	M1CDR6	Metallophos domain-containing protein.	RECA_2 domain-containing protein.	0.574
M0ZS34_SOLTU	M1CQ28_SOLTU	M0ZS34	M1CQ28	Metallophos domain-containing protein.	Uncharacterized protein.	0.617
M0ZS34_SOLTU	M1CV03_SOLTU	M0ZS34	M1CV03	Metallophos domain-containing protein.	Uncharacterized protein.	0.664
M0ZS34_SOLTU	M1D420_SOLTU	M0ZS34	M1D420	Metallophos domain-containing protein.	Uncharacterized protein.	0.544
M1A8T6_SOLTU	M1A9Z5_SOLTU	M1A8T6	M1A9Z5	Uncharacterized protein.	RECA_2 domain-containing protein.	0.464
M1A9Z5_SOLTU	M0ZNT0_SOLTU	M1A9Z5	M0ZNT0	RECA_2 domain-containing protein.	Uncharacterized protein.	0.464
M1A9Z5_SOLTU	M0ZS34_SOLTU	M1A9Z5	M0ZS34	RECA_2 domain-containing protein.	Metallophos domain-containing protein.	0.757
M1A9Z5_SOLTU	M1A8T6_SOLTU	M1A9Z5	M1A8T6	RECA_2 domain-containing protein.	Uncharacterized protein.	0.464
M1A9Z5_SOLTU	M1AI15_SOLTU	M1A9Z5	M1AI15	RECA_2 domain-containing protein.	Uncharacterized protein.	0.486