(6 nodes) Small ribosomal subunit, and Structural constituent of ribosome network (Eubacterium ventriosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:
	rpsB	Ribosomal protein S2; KEGG: dme:Dmel_CG4162 0.57 lace K00654; COG: COG0052 Ribosomal protein S2; Psort location: Cytoplasmic, score: 8.87; Belongs to the universal ribosomal protein uS2 family. (268 aa)
	rpsF	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (96 aa)
	rpsI	Ribosomal protein S9; KEGG: sce:YOL010W 0.0058 RCL1; protein similar to the RNA 3' terminal phosphate cyclase (RNA 3' terminal phosphate Cyclase-Like) K01974; COG: COG0103 Ribosomal protein S9; Psort location: Cytoplasmic, score: 8.87. (131 aa)
	rpsP	Ribosomal protein S16; KEGG: bxe:Bxe_A2823 0.011 pseudouridine synthase, Rsu K06178; COG: COG0228 Ribosomal protein S16; Psort location: Cytoplasmic, score: 8.87; Belongs to the bacterial ribosomal protein bS16 family. (81 aa)
	rpsL	Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. (139 aa)
	rpsO	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (88 aa)

Your Current Organism:

Eubacterium ventriosum

NCBI taxonomy Id: 411463
Other names: E. ventriosum ATCC 27560, Eubacterium ventriosum ATCC 27560

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rpsB	rpsF	EUBVEN_00263	EUBVEN_00538	Ribosomal protein S2; KEGG: dme:Dmel_CG4162 0.57 lace K00654; COG: COG0052 Ribosomal protein S2; Psort location: Cytoplasmic, score: 8.87; Belongs to the universal ribosomal protein uS2 family.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.999
rpsB	rpsI	EUBVEN_00263	EUBVEN_00851	Ribosomal protein S2; KEGG: dme:Dmel_CG4162 0.57 lace K00654; COG: COG0052 Ribosomal protein S2; Psort location: Cytoplasmic, score: 8.87; Belongs to the universal ribosomal protein uS2 family.	Ribosomal protein S9; KEGG: sce:YOL010W 0.0058 RCL1; protein similar to the RNA 3' terminal phosphate cyclase (RNA 3' terminal phosphate Cyclase-Like) K01974; COG: COG0103 Ribosomal protein S9; Psort location: Cytoplasmic, score: 8.87.	0.999
rpsB	rpsL	EUBVEN_00263	EUBVEN_02201	Ribosomal protein S2; KEGG: dme:Dmel_CG4162 0.57 lace K00654; COG: COG0052 Ribosomal protein S2; Psort location: Cytoplasmic, score: 8.87; Belongs to the universal ribosomal protein uS2 family.	Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.999
rpsB	rpsO	EUBVEN_00263	EUBVEN_02750	Ribosomal protein S2; KEGG: dme:Dmel_CG4162 0.57 lace K00654; COG: COG0052 Ribosomal protein S2; Psort location: Cytoplasmic, score: 8.87; Belongs to the universal ribosomal protein uS2 family.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.999
rpsB	rpsP	EUBVEN_00263	EUBVEN_01279	Ribosomal protein S2; KEGG: dme:Dmel_CG4162 0.57 lace K00654; COG: COG0052 Ribosomal protein S2; Psort location: Cytoplasmic, score: 8.87; Belongs to the universal ribosomal protein uS2 family.	Ribosomal protein S16; KEGG: bxe:Bxe_A2823 0.011 pseudouridine synthase, Rsu K06178; COG: COG0228 Ribosomal protein S16; Psort location: Cytoplasmic, score: 8.87; Belongs to the bacterial ribosomal protein bS16 family.	0.999
rpsF	rpsB	EUBVEN_00538	EUBVEN_00263	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	Ribosomal protein S2; KEGG: dme:Dmel_CG4162 0.57 lace K00654; COG: COG0052 Ribosomal protein S2; Psort location: Cytoplasmic, score: 8.87; Belongs to the universal ribosomal protein uS2 family.	0.999
rpsF	rpsI	EUBVEN_00538	EUBVEN_00851	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	Ribosomal protein S9; KEGG: sce:YOL010W 0.0058 RCL1; protein similar to the RNA 3' terminal phosphate cyclase (RNA 3' terminal phosphate Cyclase-Like) K01974; COG: COG0103 Ribosomal protein S9; Psort location: Cytoplasmic, score: 8.87.	0.999
rpsF	rpsL	EUBVEN_00538	EUBVEN_02201	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.999
rpsF	rpsO	EUBVEN_00538	EUBVEN_02750	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.999
rpsF	rpsP	EUBVEN_00538	EUBVEN_01279	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	Ribosomal protein S16; KEGG: bxe:Bxe_A2823 0.011 pseudouridine synthase, Rsu K06178; COG: COG0228 Ribosomal protein S16; Psort location: Cytoplasmic, score: 8.87; Belongs to the bacterial ribosomal protein bS16 family.	0.999
rpsI	rpsB	EUBVEN_00851	EUBVEN_00263	Ribosomal protein S9; KEGG: sce:YOL010W 0.0058 RCL1; protein similar to the RNA 3' terminal phosphate cyclase (RNA 3' terminal phosphate Cyclase-Like) K01974; COG: COG0103 Ribosomal protein S9; Psort location: Cytoplasmic, score: 8.87.	Ribosomal protein S2; KEGG: dme:Dmel_CG4162 0.57 lace K00654; COG: COG0052 Ribosomal protein S2; Psort location: Cytoplasmic, score: 8.87; Belongs to the universal ribosomal protein uS2 family.	0.999
rpsI	rpsF	EUBVEN_00851	EUBVEN_00538	Ribosomal protein S9; KEGG: sce:YOL010W 0.0058 RCL1; protein similar to the RNA 3' terminal phosphate cyclase (RNA 3' terminal phosphate Cyclase-Like) K01974; COG: COG0103 Ribosomal protein S9; Psort location: Cytoplasmic, score: 8.87.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.999
rpsI	rpsL	EUBVEN_00851	EUBVEN_02201	Ribosomal protein S9; KEGG: sce:YOL010W 0.0058 RCL1; protein similar to the RNA 3' terminal phosphate cyclase (RNA 3' terminal phosphate Cyclase-Like) K01974; COG: COG0103 Ribosomal protein S9; Psort location: Cytoplasmic, score: 8.87.	Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.999
rpsI	rpsO	EUBVEN_00851	EUBVEN_02750	Ribosomal protein S9; KEGG: sce:YOL010W 0.0058 RCL1; protein similar to the RNA 3' terminal phosphate cyclase (RNA 3' terminal phosphate Cyclase-Like) K01974; COG: COG0103 Ribosomal protein S9; Psort location: Cytoplasmic, score: 8.87.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.999
rpsI	rpsP	EUBVEN_00851	EUBVEN_01279	Ribosomal protein S9; KEGG: sce:YOL010W 0.0058 RCL1; protein similar to the RNA 3' terminal phosphate cyclase (RNA 3' terminal phosphate Cyclase-Like) K01974; COG: COG0103 Ribosomal protein S9; Psort location: Cytoplasmic, score: 8.87.	Ribosomal protein S16; KEGG: bxe:Bxe_A2823 0.011 pseudouridine synthase, Rsu K06178; COG: COG0228 Ribosomal protein S16; Psort location: Cytoplasmic, score: 8.87; Belongs to the bacterial ribosomal protein bS16 family.	0.999
rpsL	rpsB	EUBVEN_02201	EUBVEN_00263	Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	Ribosomal protein S2; KEGG: dme:Dmel_CG4162 0.57 lace K00654; COG: COG0052 Ribosomal protein S2; Psort location: Cytoplasmic, score: 8.87; Belongs to the universal ribosomal protein uS2 family.	0.999
rpsL	rpsF	EUBVEN_02201	EUBVEN_00538	Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.999
rpsL	rpsI	EUBVEN_02201	EUBVEN_00851	Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	Ribosomal protein S9; KEGG: sce:YOL010W 0.0058 RCL1; protein similar to the RNA 3' terminal phosphate cyclase (RNA 3' terminal phosphate Cyclase-Like) K01974; COG: COG0103 Ribosomal protein S9; Psort location: Cytoplasmic, score: 8.87.	0.999
rpsL	rpsO	EUBVEN_02201	EUBVEN_02750	Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.999
rpsL	rpsP	EUBVEN_02201	EUBVEN_01279	Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	Ribosomal protein S16; KEGG: bxe:Bxe_A2823 0.011 pseudouridine synthase, Rsu K06178; COG: COG0228 Ribosomal protein S16; Psort location: Cytoplasmic, score: 8.87; Belongs to the bacterial ribosomal protein bS16 family.	0.999