STRINGSTRING
fsaA fsaA SrlR_1 SrlR_1 xylB_3 xylB_3 EDS06409.1 EDS06409.1 EDS06411.1 EDS06411.1 EDS06413.1 EDS06413.1 fucA_1 fucA_1 glpR_1 glpR_1 KbaY KbaY xylB-4 xylB-4 pfkB pfkB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
fsaAKEGG: lpl:lp_2600 3.5e-58 tal1; transaldolase K01636; COG: COG0176 Transaldolase; Psort location: Cytoplasmic, score: 8.87. (225 aa)
SrlR_1Transcriptional regulator, DeoR family; KEGG: net:Neut_1829 0.00052 ribose 5-phosphate isomerase K01806; COG: COG1349 Transcriptional regulators of sugar metabolism. (250 aa)
xylB_3Carbohydrate kinase, FGGY family protein; KEGG: bth:BT4423 2.9e-118 xylulose kinase K00854; COG: COG1070 Sugar (pentulose and hexulose) kinases; Psort location: Cytoplasmic, score: 8.87. (505 aa)
EDS06409.1AP endonuclease, family 2; KEGG: rba:RB11728 2.0e-23 putative tagatose 3-epimerase K01820; COG: COG1082 Sugar phosphate isomerases/epimerases; Psort location: Cytoplasmic, score: 8.87. (295 aa)
EDS06411.1AP endonuclease, family 2; KEGG: rba:RB11728 1.6e-30 putative tagatose 3-epimerase K01820; COG: COG1082 Sugar phosphate isomerases/epimerases; Psort location: Cytoplasmic, score: 8.87. (289 aa)
EDS06413.1Hypothetical protein; Psort location: Extracellular, score: 8.82. (40 aa)
fucA_1Putative L-ribulose-5-phosphate 4-epimerase; KEGG: cpf:CPF_1051 7.0e-60 fucA; L-fuculose phosphate aldolase K01628; COG: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; Psort location: Cytoplasmic, score: 8.87. (224 aa)
glpR_1Transcriptional regulator, DeoR family; COG: COG1349 Transcriptional regulators of sugar metabolism; Psort location: Cytoplasmic, score: 8.87. (257 aa)
KbaYKetose-bisphosphate aldolase; KEGG: chy:CHY_0128 3.8e-68 fba; fructose-1,6-bisphosphate aldolase, class II K01624; COG: COG0191 Fructose/tagatose bisphosphate aldolase; Psort location: Cytoplasmic, score: 8.87. (275 aa)
xylB-4Putative xylulokinase; KEGG: cac:CAC2612 6.8e-94 xylB; xylulose kinase K00854; COG: COG1070 Sugar (pentulose and hexulose) kinases; Psort location: Cytoplasmic, score: 8.87. (510 aa)
pfkB1-phosphofructokinase; KEGG: cac:CAC2951 1.0e-58 lacC; tagatose-6-phosphate kinase K00917; COG: COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); Psort location: Cytoplasmic, score: 8.87; Belongs to the carbohydrate kinase PfkB family. LacC subfamily. (310 aa)
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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