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rbsB_3 rbsB_3 rbsK-2 rbsK-2 rbsD rbsD rbsC_4 rbsC_4 rbsA_2 rbsA_2 EDS07841.1 EDS07841.1 rbsB_1 rbsB_1 mglB_1 mglB_1 EDS07988.1 EDS07988.1 yehU_2 yehU_2 EDS07991.1 EDS07991.1 mglC mglC MglA_3 MglA_3 mglB_2 mglB_2 EDS07995.1 EDS07995.1 EDS07996.1 EDS07996.1 mglA_1 mglA_1 rbsC_1 rbsC_1 thpA thpA lsrB lsrB rbsA_3 rbsA_3 rbsC_5 rbsC_5 rbsC_6 rbsC_6 alsB alsB rbsK_1 rbsK_1 rbsC rbsC rbsA_1 rbsA_1 yphF yphF MglA_2 MglA_2 rbsC_3 rbsC_3 EDS05808.1 EDS05808.1 rbsC_7 rbsC_7 xylG xylG RbsB_2 RbsB_2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rbsB_3Sugar-binding domain protein; KEGG: msm:MSMEG_3095 6.5e-25 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component. (336 aa)
rbsK-2Putative ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. (294 aa)
rbsDRbsD/FucU transport family protein; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose. (167 aa)
rbsC_4Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_4171 3.4e-51 ribose transport system permease protein RbsC; COG: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00. (350 aa)
rbsA_2KEGG: mlo:mll7012 3.0e-123 ribose ABC transporter, ATP-binding protein K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49. (518 aa)
EDS07841.1Hypothetical protein; COG: COG5618 Predicted periplasmic lipoprotein. (222 aa)
rbsB_1Sugar-binding domain protein; KEGG: msm:MSMEG_3095 2.1e-15 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component. (341 aa)
mglB_1Hypothetical protein; KEGG: msm:MSMEG_3095 5.0e-12 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component. (352 aa)
EDS07988.1Hypothetical protein; COG: COG1879 ABC-type sugar transport system, periplasmic component; Psort location: Cytoplasmic, score: 8.87. (329 aa)
yehU_2HAMP domain protein; KEGG: bha:BH3447 4.8e-61 two-component sensor histidine kinase K07718; COG: COG2972 Predicted signal transduction protein with a C-terminal ATPase domain. (551 aa)
EDS07991.1Response regulator receiver domain protein; KEGG: ava:Ava_2028 1.3e-15 two component transcriptional regulator, LuxR family; COG: COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain; Psort location: Cytoplasmic, score: 9.98. (563 aa)
mglCKEGG: aha:AHA_1905 1.3e-37 L-arabinose ABC transporter, permease protein; COG: COG4211 ABC-type glucose/galactose transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00. (409 aa)
MglA_3ABC transporter, ATP-binding protein; KEGG: ctc:CTC00861 2.7e-161 mglA; galactoside transport ATP-binding protein mglA K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49. (521 aa)
mglB_2Sugar-binding domain protein; KEGG: msm:MSMEG_3095 8.1e-16 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component. (360 aa)
EDS07995.1Hypothetical protein; Psort location: Extracellular, score: 8.82. (40 aa)
EDS07996.1Hypothetical protein. (43 aa)
mglA_1ABC transporter, ATP-binding protein; KEGG: bha:BH2322 1.8e-125 putative simple sugar transport system ATP-binding protein K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49. (503 aa)
rbsC_1Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_4171 5.9e-63 ribose transport system permease protein RbsC; COG: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00. (316 aa)
thpASugar-binding domain protein; KEGG: msm:MSMEG_3095 1.3e-33 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component. (321 aa)
lsrBSugar-binding domain protein; KEGG: msm:MSMEG_3095 1.8e-10 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component. (350 aa)
rbsA_3KEGG: atc:AGR_L_85 8.1e-114 ABC transporter ATP binding protein K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49. (488 aa)
rbsC_5Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_4171 7.7e-38 ribose transport system permease protein RbsC; COG: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00. (329 aa)
rbsC_6KEGG: aha:AHA_1905 4.0e-34 L-arabinose ABC transporter, permease protein; COG: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00. (339 aa)
alsBSugar-binding domain protein; KEGG: msm:MSMEG_3095 3.0e-20 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component. (367 aa)
rbsK_1Kinase, PfkB family; KEGG: cpf:CPF_1884 2.3e-22 rbsK; ribokinase K00852; COG: COG0524 Sugar kinases, ribokinase family; Psort location: Cytoplasmic, score: 9.98. (314 aa)
rbsCKEGG: msm:MSMEG_4171 1.6e-55 ribose transport system permease protein RbsC; COG: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00. (315 aa)
rbsA_1ABC transporter, ATP-binding protein; KEGG: tfu:Tfu_1921 2.3e-54 ABC-type sugar transport system ATPase component K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.82. (251 aa)
yphFHypothetical protein; KEGG: msm:MSMEG_6020 6.8e-08 D-xylose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component. (340 aa)
MglA_2ABC transporter, ATP-binding protein; KEGG: tte:TTE0763 1.9e-121 mglA4; ABC-type sugar (aldose) transport system, ATPase component K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49. (504 aa)
rbsC_3Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_4171 2.9e-61 ribose transport system permease protein RbsC; COG: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00. (315 aa)
EDS05808.1Hypothetical protein; KEGG: sth:STH773 0.0082 ribose ABC transporter ATP-binding protein K02056; COG: COG1879 ABC-type sugar transport system, periplasmic component. (400 aa)
rbsC_7Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_4171 6.8e-46 ribose transport system permease protein RbsC; COG: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00. (324 aa)
xylGKEGG: yps:YPTB1326 9.2e-90 ABC sugar transporter, fused ATP-binding subunits K02056; COG: KOG0058 Peptide exporter, ABC superfamily; Psort location: CytoplasmicMembrane, score: 9.49. (503 aa)
RbsB_2Hypothetical protein; KEGG: msm:MSMEG_6020 0.0014 D-xylose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component. (413 aa)
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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