STRINGSTRING
yxeO_1 yxeO_1 yxeN yxeN yxeM yxeM EDS05466.1 EDS05466.1 yxeO_2 yxeO_2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
yxeO_1ABC transporter, ATP-binding protein; KEGG: cpe:CPE2092 1.5e-75 probable amino acid ABC transporter K02028; COG: COG1126 ABC-type polar amino acid transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49. (404 aa)
yxeNKEGG: hpa:HPAG1_0922 1.9e-27 amino acid ABC transporter, permease protein; COG: COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; Psort location: CytoplasmicMembrane, score: 10.00. (221 aa)
yxeMABC transporter, substrate-binding protein, family 3; KEGG: eci:UTI89_C2121 1.1e-24 fliY; cystine-binding periplasmic protein precursor K02030:K02424; COG: COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain. (277 aa)
EDS05466.1Hypothetical protein; KEGG: hpa:HPAG1_0922 3.9e-11 amino acid ABC transporter, permease protein; COG: COG0765 ABC-type amino acid transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.82. (89 aa)
yxeO_2ABC transporter, ATP-binding protein; KEGG: cac:CAC0879 2.8e-72 ABC-type polar amino acid transport system, ATPase component K02028; COG: COG1126 ABC-type polar amino acid transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49. (247 aa)
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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