12 items (Clostridium scindens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	brnQ	Branched-chain amino acid transport system II carrier protein; Component of the transport system for branched-chain amino acids. (478 aa)
	artM	KEGG: lin:lin0841 5.9e-95 similar to amino acid ABC transporter, ATP-binding protein K02028; COG: COG1126 ABC-type polar amino acid transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49. (244 aa)
	agcS	Amino acid carrier protein; KEGG: hpa:HPAG1_0925 2.4e-75 D-alanine glycine permease K01613; COG: COG1115 Na+/alanine symporter; Psort location: CytoplasmicMembrane, score: 10.00. (456 aa)
	tcyC	ABC transporter, ATP-binding protein; KEGG: mst:Msp_0958 4.3e-92 predicted ABC-type polar amino acid transport system, ATP-binding protein K02028; COG: COG1126 ABC-type polar amino acid transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49. (228 aa)
	agcS-2	Amino acid carrier protein; KEGG: hpa:HPAG1_0925 3.9e-98 D-alanine glycine permease K01613; COG: COG1115 Na+/alanine symporter; Psort location: CytoplasmicMembrane, score: 10.00. (476 aa)
	sstT	Transporter, dicarboxylate/amino acid:cation Na+/H+ symporter family protein; Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system). Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. (439 aa)
	metN	ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Methionine importer (TC 3.A.1.24) family. (322 aa)
	glnQ_1	ABC transporter, ATP-binding protein; KEGG: cpe:CPE0602 2.9e-86 probable amino acid ABC transporter K02028; COG: COG1126 ABC-type polar amino acid transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49. (248 aa)
	yxeO_1	ABC transporter, ATP-binding protein; KEGG: cpe:CPE2092 1.5e-75 probable amino acid ABC transporter K02028; COG: COG1126 ABC-type polar amino acid transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49. (404 aa)
	tupC	KEGG: bbr:BB1043 1.2e-23 ATP-binding component of ABC transporter K02010; COG: COG3839 ABC-type sugar transport systems, ATPase components; Psort location: CytoplasmicMembrane, score: 9.49. (201 aa)
	yxeO_2	ABC transporter, ATP-binding protein; KEGG: cac:CAC0879 2.8e-72 ABC-type polar amino acid transport system, ATPase component K02028; COG: COG1126 ABC-type polar amino acid transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49. (247 aa)
	agcS-3	Amino acid carrier protein; KEGG: hpa:HPAG1_0925 7.1e-67 D-alanine glycine permease K01613; COG: COG1115 Na+/alanine symporter; Psort location: CytoplasmicMembrane, score: 10.00. (464 aa)

Your Current Organism:

Clostridium scindens

NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
agcS	tcyC	CLOSCI_00777	CLOSCI_00782	Amino acid carrier protein; KEGG: hpa:HPAG1_0925 2.4e-75 D-alanine glycine permease K01613; COG: COG1115 Na+/alanine symporter; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, ATP-binding protein; KEGG: mst:Msp_0958 4.3e-92 predicted ABC-type polar amino acid transport system, ATP-binding protein K02028; COG: COG1126 ABC-type polar amino acid transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.	0.407
tcyC	agcS	CLOSCI_00782	CLOSCI_00777	ABC transporter, ATP-binding protein; KEGG: mst:Msp_0958 4.3e-92 predicted ABC-type polar amino acid transport system, ATP-binding protein K02028; COG: COG1126 ABC-type polar amino acid transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.	Amino acid carrier protein; KEGG: hpa:HPAG1_0925 2.4e-75 D-alanine glycine permease K01613; COG: COG1115 Na+/alanine symporter; Psort location: CytoplasmicMembrane, score: 10.00.	0.407
yxeO_1	yxeO_2	CLOSCI_03145	CLOSCI_03501	ABC transporter, ATP-binding protein; KEGG: cpe:CPE2092 1.5e-75 probable amino acid ABC transporter K02028; COG: COG1126 ABC-type polar amino acid transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.	ABC transporter, ATP-binding protein; KEGG: cac:CAC0879 2.8e-72 ABC-type polar amino acid transport system, ATPase component K02028; COG: COG1126 ABC-type polar amino acid transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.	0.903
yxeO_2	yxeO_1	CLOSCI_03501	CLOSCI_03145	ABC transporter, ATP-binding protein; KEGG: cac:CAC0879 2.8e-72 ABC-type polar amino acid transport system, ATPase component K02028; COG: COG1126 ABC-type polar amino acid transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.	ABC transporter, ATP-binding protein; KEGG: cpe:CPE2092 1.5e-75 probable amino acid ABC transporter K02028; COG: COG1126 ABC-type polar amino acid transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.	0.903