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mglB_2 mglB_2 EDS07009.1 EDS07009.1 treP treP sorC sorC thpA thpA fucU fucU lsrB lsrB EDS06809.1 EDS06809.1 EDS06810.1 EDS06810.1 alsB alsB galM galM yiaO yiaO yphF yphF EDS05808.1 EDS05808.1 RbsB_2 RbsB_2 EDS05232.1 EDS05232.1 Mro Mro mglB_1 mglB_1 rbsB_1 rbsB_1 rbsD rbsD DeoR_1 DeoR_1 rbsB_3 rbsB_3 EDS08804.1 EDS08804.1 EDS07988.1 EDS07988.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
mglB_2Sugar-binding domain protein; KEGG: msm:MSMEG_3095 8.1e-16 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component. (360 aa)
EDS07009.1Hypothetical protein. (290 aa)
trePGlycosyl hydrolase family 65 central catalytic domain protein; KEGG: nca:Noca_3421 5.8e-136 kojibiose phosphorylase; COG: COG1554 Trehalose and maltose hydrolases (possible phosphorylases); Psort location: Cytoplasmic, score: 8.87. (783 aa)
sorCKEGG: ret:RHE_PA00021 6.4e-34 putative transcriptional regulator protein, AsnC/GntR family K00863; COG: COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain; Psort location: Cytoplasmic, score: 8.87. (317 aa)
thpASugar-binding domain protein; KEGG: msm:MSMEG_3095 1.3e-33 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component. (321 aa)
fucURbsD/FucU transport family protein; COG: COG4154 Fucose dissimilation pathway protein FucU; Psort location: Cytoplasmic, score: 8.87; Belongs to the RbsD / FucU family. (153 aa)
lsrBSugar-binding domain protein; KEGG: msm:MSMEG_3095 1.8e-10 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component. (350 aa)
EDS06809.1Hypothetical protein; COG: COG0561 Predicted hydrolases of the HAD superfamily; Psort location: Cytoplasmic, score: 8.87. (288 aa)
EDS06810.1Glycosyl hydrolase family 65 central catalytic domain protein; KEGG: ava:Ava_3752 1.9e-98 HAD-superfamily hydrolase subfamily IA, variant 3 K01838; COG: COG0637 Predicted phosphatase/phosphohexomutase; Psort location: Cytoplasmic, score: 8.87. (758 aa)
alsBSugar-binding domain protein; KEGG: msm:MSMEG_3095 3.0e-20 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component. (367 aa)
galMAldose 1-epimerase; KEGG: ldb:Ldb1268 5.2e-48 putative mutarotase K01785; COG: COG2017 Galactose mutarotase and related enzymes; Psort location: Cytoplasmic, score: 8.87. (290 aa)
yiaOTRAP transporter solute receptor, DctP family; COG: COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component. (346 aa)
yphFHypothetical protein; KEGG: msm:MSMEG_6020 6.8e-08 D-xylose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component. (340 aa)
EDS05808.1Hypothetical protein; KEGG: sth:STH773 0.0082 ribose ABC transporter ATP-binding protein K02056; COG: COG1879 ABC-type sugar transport system, periplasmic component. (400 aa)
RbsB_2Hypothetical protein; KEGG: msm:MSMEG_6020 0.0014 D-xylose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component. (413 aa)
EDS05232.1Hypothetical protein; COG: COG1879 ABC-type sugar transport system, periplasmic component. (328 aa)
MroAldose 1-epimerase; Converts alpha-aldose to the beta-anomer. (337 aa)
mglB_1Hypothetical protein; KEGG: msm:MSMEG_3095 5.0e-12 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component. (352 aa)
rbsB_1Sugar-binding domain protein; KEGG: msm:MSMEG_3095 2.1e-15 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component. (341 aa)
rbsDRbsD/FucU transport family protein; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose. (167 aa)
DeoR_1Putative sugar-binding domain protein; KEGG: rde:RD1_3614 2.8e-33 glycerone kinase, putative K00863; COG: COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain; Psort location: Cytoplasmic, score: 8.87. (316 aa)
rbsB_3Sugar-binding domain protein; KEGG: msm:MSMEG_3095 6.5e-25 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component. (336 aa)
EDS08804.1Hypothetical protein; KEGG: pub:SAR11_0588 0.0014 yqgN; 5-formyltetrahydrofolate cyclo-ligase-like protein K01934; COG: NOG11699 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (448 aa)
EDS07988.1Hypothetical protein; COG: COG1879 ABC-type sugar transport system, periplasmic component; Psort location: Cytoplasmic, score: 8.87. (329 aa)
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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