STRINGSTRING
prmA prmA rsmE rsmE EDS08716.1 EDS08716.1 yhdJ_4 yhdJ_4 ubiE ubiE EDS08800.1 EDS08800.1 zntR_2 zntR_2 EDS08628.1 EDS08628.1 yhdJ_3 yhdJ_3 YhdJ_1 YhdJ_1 DpnM_1 DpnM_1 rrmJ rrmJ EDS08127.1 EDS08127.1 metH_3 metH_3 rsmD rsmD RsmF RsmF EDS08151.1 EDS08151.1 EDS08164.1 EDS08164.1 EDS08256.1 EDS08256.1 Dam Dam dcm dcm rlmH rlmH trmK trmK thyX thyX EDS07923.1 EDS07923.1 EDS07947.1 EDS07947.1 trmL trmL hemN_1 hemN_1 EDS08022.1 EDS08022.1 trmB trmB mraW mraW thyA thyA DesVI DesVI EDS07753.1 EDS07753.1 trmD trmD EDS07368.1 EDS07368.1 dcm-2 dcm-2 EDS07056.1 EDS07056.1 prmC prmC EDS07087.1 EDS07087.1 gidB gidB comC comC RlmL RlmL mboIIM_1 mboIIM_1 dam dam MboIIM_2 MboIIM_2 menG menG EDS06243.1 EDS06243.1 fokIM fokIM yfiC yfiC rsmI rsmI EDS06121.1 EDS06121.1 sun sun rlmN rlmN rumA rumA trmO trmO ksgA ksgA EDS05781.1 EDS05781.1 Ogt Ogt rumA-2 rumA-2 EDS05572.1 EDS05572.1 yhdJ_2 yhdJ_2 rlmN-2 rlmN-2 EDS05616.1 EDS05616.1 EDS05635.1 EDS05635.1 EDS05636.1 EDS05636.1 dinJ dinJ dnrC dnrC EDS05418.1 EDS05418.1 hpaIIM hpaIIM fliU fliU hsdM hsdM cbiD cbiD cobI cobI cobM cobM cbiG cbiG cobJ cobJ cobK cobK hemC hemC EDS05153.1 EDS05153.1 EDS05245.1 EDS05245.1 EDS05270.1 EDS05270.1 EDS05280.1 EDS05280.1 rlmK rlmK
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
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a 3D structure is known or predicted
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Known Interactions
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Predicted Interactions
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prmARibosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family. (319 aa)
rsmERNA methyltransferase, RsmE family; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. (245 aa)
EDS08716.1O-methyltransferase; KEGG: ctc:CTC01062 2.4e-43 caffeoyl-coA O-methyltransferase K00588; COG: COG4122 Predicted O-methyltransferase; Psort location: Cytoplasmic, score: 8.87. (214 aa)
yhdJ_4KEGG: yps:YPTB1797 1.5e-64 putative DNA methyltransferase K07319; COG: COG0863 DNA modification methylase; Psort location: Cytoplasmic, score: 8.87; Belongs to the N(4)/N(6)-methyltransferase family. (293 aa)
ubiEMethyltransferase domain protein; KEGG: bce:BC0620 5.7e-10 ubiquinone/menaquinone biosynthesis methyltransferase UbiE K00599; COG: COG0500 SAM-dependent methyltransferases; Psort location: Cytoplasmic, score: 8.87. (255 aa)
EDS08800.1Hypothetical protein. (61 aa)
zntR_2Methyltransferase domain protein; KEGG: btk:BT9727_3407 3.2e-14 possible ubiquinone/menaquinone methyltransferase K00599; COG: COG0500 SAM-dependent methyltransferases; Psort location: Cytoplasmic, score: 8.87. (393 aa)
EDS08628.1Hypothetical protein; KEGG: spb:M28_Spy1090 1.7e-28 tRNA (uracil-5-)-methyltransferase K00599; COG: COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; Psort location: Cytoplasmic, score: 8.87. (123 aa)
yhdJ_3DNA (cytosine-5-)-methyltransferase; KEGG: spa:M6_Spy1144 5.6e-106 adenine-specific methyltransferase K00571; COG: COG1475 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87. (417 aa)
YhdJ_1DNA (cytosine-5-)-methyltransferase; KEGG: hit:NTHI1495 2.1e-76 modification methylase DpnIIB-like K00571; COG: COG0863 DNA modification methylase; Psort location: Cytoplasmic, score: 8.87; Belongs to the N(4)/N(6)-methyltransferase family. (281 aa)
DpnM_1D12 class N6 adenine-specific DNA methyltransferase; KEGG: bbr:BB3607 1.2e-23 modification methylase K06223; COG: COG0338 Site-specific DNA methylase; Psort location: Cytoplasmic, score: 8.87. (275 aa)
rrmJKEGG: cff:CFF8240_1111 1.0e-26 rrmJ; ribosomal RNA large subunit methyltransferase J K00599; COG: COG1189 Predicted rRNA methylase; Psort location: Cytoplasmic, score: 8.87. (269 aa)
EDS08127.1Vitamin B12 dependent methionine synthase, activation domain protein; KEGG: ctc:CTC01807 5.0e-27 putative 5-methyltetrahydrofolate--homocysteine methyltransferase K00548; COG: NOG21937 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (215 aa)
metH_3KEGG: ctc:CTC01806 1.4e-203 5-methyltetrahydrofolate--homocysteine methyltransferase K00548; COG: COG1410 Methionine synthase I, cobalamin-binding domain; Psort location: Cytoplasmic, score: 8.87. (795 aa)
rsmDRNA methyltransferase, RsmD family; KEGG: fnu:FN1329 8.7e-30 methyltransferase K00599; COG: COG0742 N6-adenine-specific methylase; Psort location: Cytoplasmic, score: 8.87. (189 aa)
RsmFNOL1/NOP2/sun family protein; KEGG: lsl:LSL_0999 8.9e-76 putative 23S rRNA m(5)C methyltransferase K00599; COG: COG3270 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87. (479 aa)
EDS08151.1Putative radical SAM protein YgiQ; KEGG: fnu:FN0734 4.3e-131 Fe-S oxidoreductase; COG: COG1032 Fe-S oxidoreductase; Psort location: Cytoplasmic, score: 8.87. (626 aa)
EDS08164.1Radical SAM domain protein; KEGG: ctc:CTC02064 5.7e-177 Fe-S oxidoreductase; COG: COG1032 Fe-S oxidoreductase; Psort location: Cytoplasmic, score: 8.87. (621 aa)
EDS08256.1DNA N-6-adenine-methyltransferase (Dam); KEGG: sac:SACOL0346 1.1e-40 prophage L54a, N-6-adenine-methyltransferase K00571; COG: NOG18143 non supervised orthologous group. (191 aa)
DamD12 class N6 adenine-specific DNA methyltransferase; KEGG: bbr:BB3607 8.9e-21 modification methylase K06223; COG: COG0338 Site-specific DNA methylase; Psort location: Cytoplasmic, score: 8.87. (265 aa)
dcmDNA (cytosine-5-)-methyltransferase; KEGG: san:gbs1370 1.3e-37 similar to methyl transferase K00558; COG: COG0270 Site-specific DNA methylase; Psort location: Cytoplasmic, score: 8.87; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (418 aa)
rlmHrRNA large subunit m3Psi methyltransferase RlmH; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. (159 aa)
trmKHypothetical protein; KEGG: fnu:FN0907 0.0071 ribosomal RNA small subunit methyltransferase C K00564; COG: COG2384 Predicted SAM-dependent methyltransferase; Psort location: Cytoplasmic, score: 8.87. (232 aa)
thyXHypothetical protein; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant. (257 aa)
EDS07923.1Hypothetical protein; KEGG: fnu:FN0984 8.0e-36 tetracenomycin polyketide synthesis O-methyltransferase TcmP K00599; COG: COG3315 O-Methyltransferase involved in polyketide biosynthesis; Psort location: Cytoplasmic, score: 8.87. (281 aa)
EDS07947.1Putative RNA methyltransferase, TrmH family, group 3; KEGG: gka:GK2709 6.1e-38 rRNA methylase K03437; COG: COG0566 rRNA methylases; Psort location: Cytoplasmic, score: 8.87. (263 aa)
trmLPutative RNA methyltransferase, TrmH family, group 2; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. (163 aa)
hemN_1Radical SAM domain protein; KEGG: cpe:CPE1645 2.5e-112 Mg-protoporphyrin IX monomethyl ester oxidative cyclase K04034; COG: COG1032 Fe-S oxidoreductase; Psort location: Cytoplasmic, score: 8.87. (588 aa)
EDS08022.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (234 aa)
trmBtRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (233 aa)
mraWS-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. (311 aa)
thyAThymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis. (282 aa)
DesVIMethyltransferase domain protein; KEGG: bce:BC4326 3.0e-45 methyltransferase K00599; COG: COG0500 SAM-dependent methyltransferases; Psort location: Cytoplasmic, score: 8.87. (264 aa)
EDS07753.1RNA methyltransferase, TrmH family, group 3; KEGG: bce:BC0112 3.0e-68 23S rRNA methyltransferase K03218; COG: COG0566 rRNA methylases; Psort location: Cytoplasmic, score: 8.87; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (250 aa)
trmDtRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. (244 aa)
EDS07368.1MT-A70; KEGG: spj:MGAS2096_Spy1128 2.2e-56 adenine-specific methyltransferase K00571; COG: COG4725 Transcriptional activator, adenine-specific DNA methyltransferase; Psort location: Cytoplasmic, score: 8.87; Belongs to the MT-A70-like family. (187 aa)
dcm-2KEGG: cac:CAC1222 4.8e-100 DNA-methyltransferase (cytosine-specific) K00558; COG: COG0270 Site-specific DNA methylase; Psort location: Cytoplasmic, score: 8.87. (324 aa)
EDS07056.1Putative rRNA methylase; KEGG: btl:BALH_4325 9.3e-26 mraW; SAM-dependent methyltransferase, MraW methylase family K00599; COG: COG0500 SAM-dependent methyltransferases; Psort location: Cytoplasmic, score: 8.87. (187 aa)
prmCprotein-(glutamine-N5) methyltransferase, release factor-specific; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily. (283 aa)
EDS07087.1Hypothetical protein; COG: COG3872 Predicted metal-dependent enzyme; Psort location: CytoplasmicMembrane, score: 9.97. (311 aa)
gidB16S rRNA methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. (237 aa)
comCBacterial peptidase A24, N-terminal domain protein; KEGG: tte:TTE1266 3.5e-42 pppA; leader peptidase (prepilin peptidase) / N-methyltransferase K02654; COG: COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases; Psort location: CytoplasmicMembrane, score: 10.00. (257 aa)
RlmLHypothetical protein; KEGG: bcz:BCZK1441 1.3e-104 methyltransferase K00599; COG: COG0116 Predicted N6-adenine-specific DNA methylase; Psort location: Cytoplasmic, score: 8.87. (390 aa)
mboIIM_1Putative DNA (cytosine-5-)-methyltransferase; KEGG: lic:LIC11323 5.2e-10 methyltransferase DNA modification enzyme K00571; COG: COG0863 DNA modification methylase; Psort location: Cytoplasmic, score: 8.87; Belongs to the N(4)/N(6)-methyltransferase family. (271 aa)
damKEGG: mta:Moth_1737 2.2e-63 DNA adenine methylase K06223; COG: COG0338 Site-specific DNA methylase. (639 aa)
MboIIM_2DNA (cytosine-5-)-methyltransferase; KEGG: spj:MGAS2096_Spy1124 6.6e-112 adenine-specific methyltransferase K00571; COG: COG0863 DNA modification methylase; Psort location: Cytoplasmic, score: 8.87; Belongs to the N(4)/N(6)-methyltransferase family. (250 aa)
menGMethyltransferase domain protein; KEGG: sru:SRU_1592 2.7e-19 menaquinone biosynthesis methyltransferase UbiE K00599; COG: COG0500 SAM-dependent methyltransferases; Psort location: Cytoplasmic, score: 8.87. (202 aa)
EDS06243.1Restriction endonuclease; COG: NOG37482 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (783 aa)
fokIMKEGG: hhe:HH1050 1.4e-14 putative site-specific DNA-methyltransferase K07318; COG: COG3392 Adenine-specific DNA methylase; Psort location: Cytoplasmic, score: 8.87. (957 aa)
yfiCMethyltransferase domain protein; KEGG: ctc:CTC00225 2.9e-54 methyltransferase K00599; COG: COG4123 Predicted O-methyltransferase; Psort location: Cytoplasmic, score: 8.87. (246 aa)
rsmIS-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. (278 aa)
EDS06121.1Methyltransferase domain protein; KEGG: plt:Plut_1697 1.2e-11 ubiquinone/menaquinone biosynthesis methyltransferase K03183; COG: COG0500 SAM-dependent methyltransferases. (201 aa)
sunRibosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. (436 aa)
rlmN23S rRNA m2A2503 methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family. (357 aa)
rumA23S rRNA (uracil-5-)-methyltransferase RumA; KEGG: ctc:CTC01941 1.1e-120 tRNA (uracil-5-) -methyltransferase K00557; COG: COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; Psort location: Cytoplasmic, score: 8.87; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (460 aa)
trmOMethyltransferase, YaeB family; KEGG: eci:UTI89_C0211 9.6e-40 yaeB; hypothetical protein YaeB; COG: COG1720 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87. (236 aa)
ksgADimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. (291 aa)
EDS05781.1Putative FeS-containing Cyanobacterial-specific oxidoreductase; COG: COG1625 Fe-S oxidoreductase, related to NifB/MoaA family; Psort location: Cytoplasmic, score: 8.87. (476 aa)
Ogt6-O-methylguanine DNA methyltransferase, DNA binding domain protein; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. (182 aa)
rumA-223S rRNA (uracil-5-)-methyltransferase RumA; KEGG: bha:BH0687 1.9e-121 RNA methyltransferase K00599; COG: COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; Psort location: Cytoplasmic, score: 8.87; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (567 aa)
EDS05572.1Hypothetical protein. (71 aa)
yhdJ_2KEGG: sth:STH334 7.3e-65 DNA modification methylase M.SthI K07319; COG: COG0863 DNA modification methylase; Psort location: Cytoplasmic, score: 8.87; Belongs to the N(4)/N(6)-methyltransferase family. (319 aa)
rlmN-223S rRNA m2A2503 methyltransferase; KEGG: fnu:FN0127 0.0038 Fe-S oxidoreductase; COG: COG0820 Predicted Fe-S-cluster redox enzyme; Psort location: Cytoplasmic, score: 8.87; Belongs to the radical SAM superfamily. RlmN family. (329 aa)
EDS05616.1N-6 DNA Methylase; KEGG: chu:CHU_1468 6.8e-12 dpn; possible adenine-specific DNA methylase K00599; COG: COG4646 DNA methylase; Psort location: Cytoplasmic, score: 8.87. (2488 aa)
EDS05635.1N-6 DNA Methylase; KEGG: dde:Dde_2498 1.6e-94 type I restriction-modification system, M subunit K03427; COG: COG0286 Type I restriction-modification system methyltransferase subunit; Psort location: Cytoplasmic, score: 8.87. (304 aa)
EDS05636.1Hypothetical protein; KEGG: ana:alr3475 6.3e-43 type I restriction modification enzyme M subunit K03427; COG: COG0286 Type I restriction-modification system methyltransferase subunit. (131 aa)
dinJAddiction module antitoxin, RelB/DinJ family; COG: COG3077 DNA-damage-inducible protein J. (101 aa)
dnrCMethyltransferase domain protein; KEGG: hsa:57412 1.3e-65 AS3MT; arsenic (+3 oxidation state) methyltransferase K07755; COG: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; Psort location: Cytoplasmic, score: 8.87. (423 aa)
EDS05418.1Hypothetical protein; COG: COG0727 Predicted Fe-S-cluster oxidoreductase; Psort location: Cytoplasmic, score: 8.87. (229 aa)
hpaIIMModification methylase HpaII; KEGG: mpe:MYPE9800 3.9e-75 cytosine-specific DNA methylase K00558; COG: COG0270 Site-specific DNA methylase; Psort location: Cytoplasmic, score: 8.87. (405 aa)
fliUHypothetical protein; KEGG: sec:SC1961 1.6e-10 fliB; N-methylation of lysine residues in flagellin K00599; COG: NOG18602 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (401 aa)
hsdMKEGG: tde:TDE0369 2.0e-245 hsdM-1; type I restriction-modification system, M subunit K03427; COG: COG0286 Type I restriction-modification system methyltransferase subunit; Psort location: Cytoplasmic, score: 8.87. (890 aa)
cbiDCobalamin biosynthesis protein CbiD; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A. (384 aa)
cobIKEGG: mst:Msp_0038 1.4e-31 cbiL; CbiL K03394; COG: COG2243 Precorrin-2 methylase; Psort location: Cytoplasmic, score: 8.87; Belongs to the precorrin methyltransferase family. (231 aa)
cobMKEGG: mta:Moth_1092 1.4e-68 precorrin-4 C11-methyltransferase K03396; COG: COG2875 Precorrin-4 methylase. (264 aa)
cbiGCbiG; KEGG: dde:Dde_3181 1.8e-33 precorrin-3B C17-methyltransferase K02189:K03395:K00594; COG: COG2073 Cobalamin biosynthesis protein CbiG; Psort location: Cytoplasmic, score: 8.87. (348 aa)
cobJKEGG: lmo:lmo1199 7.6e-63 cbiH; precorrin-3B C17-methyltransferase K03395; COG: COG1010 Precorrin-3B methylase; Psort location: Cytoplasmic, score: 8.87. (245 aa)
cobKprecorrin-6A reductase; KEGG: ctc:CTC00734 5.1e-57 cbiT; precorrin-6B methylase/decarboxylase cbiT/cbiE K03399:K02191; COG: COG2241 Precorrin-6B methylase 1; Psort location: Cytoplasmic, score: 8.87. (664 aa)
hemCHydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. (803 aa)
EDS05153.1Hypothetical protein; COG: COG5441 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87. (416 aa)
EDS05245.1Hypothetical protein; KEGG: bbr:BB1668 1.4e-16 modification methylase K00558; COG: COG0270 Site-specific DNA methylase. (93 aa)
EDS05270.1COG: COG4422 Bacteriophage protein gp37. (235 aa)
EDS05280.1Hypothetical protein. (46 aa)
rlmKHypothetical protein; KEGG: zmo:ZMO1889 7.7e-54 SAM-dependent methyltransferase K00568; COG: COG1092 Predicted SAM-dependent methyltransferases; Psort location: Cytoplasmic, score: 8.87. (286 aa)
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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