STRINGSTRING
PurR PurR rbsB_3 rbsB_3 rbsB_1 rbsB_1 cytR cytR rbsR rbsR mglB_1 mglB_1 EDS07988.1 EDS07988.1 mglB_2 mglB_2 rbsK-3 rbsK-3 EDS07456.1 EDS07456.1 ccpA ccpA thpA thpA lsrB lsrB degA degA alsB alsB yphF yphF yurK_1 yurK_1 EDS05808.1 EDS05808.1 RbsB_2 RbsB_2 EDS05232.1 EDS05232.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PurRHypothetical protein; COG: COG1609 Transcriptional regulators; Psort location: Cytoplasmic, score: 9.98. (229 aa)
rbsB_3Sugar-binding domain protein; KEGG: msm:MSMEG_3095 6.5e-25 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component. (336 aa)
rbsB_1Sugar-binding domain protein; KEGG: msm:MSMEG_3095 2.1e-15 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component. (341 aa)
cytRSugar-binding domain protein; COG: COG1609 Transcriptional regulators; Psort location: Cytoplasmic, score: 9.98. (353 aa)
rbsRSugar-binding domain protein; COG: COG1609 Transcriptional regulators; Psort location: Cytoplasmic, score: 9.98. (332 aa)
mglB_1Hypothetical protein; KEGG: msm:MSMEG_3095 5.0e-12 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component. (352 aa)
EDS07988.1Hypothetical protein; COG: COG1879 ABC-type sugar transport system, periplasmic component; Psort location: Cytoplasmic, score: 8.87. (329 aa)
mglB_2Sugar-binding domain protein; KEGG: msm:MSMEG_3095 8.1e-16 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component. (360 aa)
rbsK-3Putative ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. (633 aa)
EDS07456.1ABC transporter substrate binding protein; COG: COG2984 ABC-type uncharacterized transport system, periplasmic component. (356 aa)
ccpAKEGG: efa:EF1922 4.6e-07 transcriptional regulator, LacI family/carbohydrate kinase, PfkB family protein K00852; COG: COG1609 Transcriptional regulators; Psort location: Cytoplasmic, score: 9.98. (360 aa)
thpASugar-binding domain protein; KEGG: msm:MSMEG_3095 1.3e-33 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component. (321 aa)
lsrBSugar-binding domain protein; KEGG: msm:MSMEG_3095 1.8e-10 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component. (350 aa)
degASugar-binding domain protein; KEGG: efa:EF1922 6.1e-07 transcriptional regulator, LacI family/carbohydrate kinase, PfkB family protein K00852; COG: COG1609 Transcriptional regulators; Psort location: Cytoplasmic, score: 9.98. (365 aa)
alsBSugar-binding domain protein; KEGG: msm:MSMEG_3095 3.0e-20 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component. (367 aa)
yphFHypothetical protein; KEGG: msm:MSMEG_6020 6.8e-08 D-xylose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component. (340 aa)
yurK_1Transcriptional regulator, GntR family; KEGG: reh:H16_A3019 0.00013 hutC; histidine utilization repressor; COG: COG2188 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87. (342 aa)
EDS05808.1Hypothetical protein; KEGG: sth:STH773 0.0082 ribose ABC transporter ATP-binding protein K02056; COG: COG1879 ABC-type sugar transport system, periplasmic component. (400 aa)
RbsB_2Hypothetical protein; KEGG: msm:MSMEG_6020 0.0014 D-xylose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component. (413 aa)
EDS05232.1Hypothetical protein; COG: COG1879 ABC-type sugar transport system, periplasmic component. (328 aa)
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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