STRINGSTRING
EFB77539.1 EFB77539.1 EFB77579.1 EFB77579.1 EFB77538.1 EFB77538.1 EFB75803.1 EFB75803.1 EFB75805.1 EFB75805.1 EFB75209.1 EFB75209.1 EFB75166.1 EFB75166.1 nifJ nifJ pckA pckA EFB74583.1 EFB74583.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
EFB77539.1Aconitase family protein; KEGG: ecp:ECP_0784 1.2e-238 aconitate hydratase K01680; Psort location: Cytoplasmic, score: 9.26. (748 aa)
EFB77579.1Isocitrate dehydrogenase, NADP-dependent; KEGG: tte:TTE0387 3.6e-159 icd; Isocitrate dehydrogenases K00031; Belongs to the isocitrate and isopropylmalate dehydrogenases family. (404 aa)
EFB77538.1KEGG: mta:Moth_1122 7.6e-118 citrate (Si)-synthase K01647; Psort location: Cytoplasmic, score: 9.97. (458 aa)
EFB75803.1Hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type; KEGG: sth:STH2642 7.9e-52 fumarate hydratase subunit B K01678. (187 aa)
EFB75805.1Hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type; KEGG: cac:CAC3091 1.8e-86 fumarate hydratase, subunit A (N-terminal domain of FumA E.coli) class I K01677; Psort location: Cytoplasmic, score: 8.96. (282 aa)
EFB75209.1KEGG: lla:L67186 3.4e-131 gltA; citrate synthase K01647; Psort location: Cytoplasmic, score: 9.97. (451 aa)
EFB75166.1Hypothetical protein. (183 aa)
nifJPyruvate synthase; KEGG: ctc:CTC01741 3.5e-296 pyruvate-flavodoxin oxidoreductase K03737. (909 aa)
pckAPhosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. (534 aa)
EFB74583.1Hypothetical protein; KEGG: ctc:CTC01741 1.0e-113 pyruvate-flavodoxin oxidoreductase K03737. (386 aa)
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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