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| | EEU97970.1 | Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (1222 aa) |
| | EEU97933.1 | Sigma-70 region 2; KEGG: reh:H16_A1096 1.1e-06 rpoE3; DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) K00960; Psort location: Cytoplasmic, score: 8.96; Belongs to the sigma-70 factor family. ECF subfamily. (161 aa) |
| | asnS | asparagine--tRNA ligase; KEGG: cno:NT01CX_1233 4.0e-160 asnS; asparaginyl-tRNA synthetase K01893; Psort location: Cytoplasmic, score: 10.00. (462 aa) |
| | rpmH | Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. (44 aa) |
| | EEU98316.1 | KEGG: nar:Saro_3046 1.7e-19 pseudouridine synthase, RluD K06180. (253 aa) |
| | EEU98300.1 | biotin--[acetyl-CoA-carboxylase] ligase; KEGG: lxx:Lxx04800 3.2e-32 birA; biotin acetyl-CoA-carboxylase synthetase K03524:K01947. (255 aa) |
| | EEU98299.1 | Phosphodiesterase family protein; KEGG: eci:UTI89_C2584 1.2e-11 yfcE; hypothetical protein. (162 aa) |
| | rsmI | S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. (279 aa) |
| | EEU98182.1 | RNA methyltransferase, RsmE family. (305 aa) |
| | EEU98161.1 | Sigma-70, region 4; KEGG: btl:BALH_3229 1.4e-06 sigW; RNA polymerase sigma-70 factor, ECF subfamily K00960; Psort location: Cytoplasmic, score: 8.96. (140 aa) |
| | EEU98139.1 | Sigma-70 region 2; KEGG: chu:CHU_3562 4.3e-07 rpoE; RNA polymerase sigma-70 factor, ECF subfamily K00960; Psort location: Cytoplasmic, score: 8.96. (186 aa) |
| | prfC | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. (534 aa) |
| | rpsT | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. (86 aa) |
| | rumA | 23S rRNA (uracil-5-)-methyltransferase RumA; KEGG: bcl:ABC1101 2.7e-74 S-adenosylmethionine (SAM)-dependent methyltransferase K00599; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (374 aa) |
| | EEU97823.1 | Sigma-70 region 2; KEGG: reh:H16_A2373 2.2e-05 rpoS; DNA-directed RNA polymerase sigma subunit (sigma38) K00960; Belongs to the sigma-70 factor family. (221 aa) |
| | rnz | Putative ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (312 aa) |
| | EEU97799.1 | tRNA nucleotidyltransferase/poly(A) polymerase family protein; KEGG: lpl:lp_1873 2.9e-55 papL; tRNA nucleotidyltransferase (CCA-adding enzyme) K00974; Psort location: Cytoplasmic, score: 8.96. (464 aa) |
| | trmU | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. (371 aa) |
| | EEU97797.1 | ThiF family protein; KEGG: cal:orf19.2115 3.4e-28 molybdopterin-converting factor; Psort location: Cytoplasmic, score: 8.96. (262 aa) |
| | EEU97787.1 | Sigma-70 region 2; KEGG: btl:BALH_3229 1.8e-13 sigW; RNA polymerase sigma-70 factor, ECF subfamily K00960; Psort location: Cytoplasmic, score: 8.96. (163 aa) |
| | sigF | KEGG: hpa:HPAG1_0089 1.9e-18 RNA polymerase sigma-80 factor K00960; Psort location: Cytoplasmic, score: 9.97; Belongs to the sigma-70 factor family. (222 aa) |
| | valS | valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. (901 aa) |
| | EEU94957.1 | CAAX amino terminal protease family protein; KEGG: ddi:DDB0184448 0.0028 hypothetical protein K08658; Psort location: CytoplasmicMembrane, score: 10.00. (293 aa) |
| | EEU94935.1 | Dihydrouridine synthase (Dus); Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (313 aa) |
| | glnS | glutamine--tRNA ligase; KEGG: cno:NT01CX_0275 7.8e-164 glnS; glutaminyl-tRNA synthetase K01886; Psort location: Cytoplasmic, score: 9.97. (552 aa) |
| | EEU95004.1 | Metallo-beta-lactamase domain protein; KEGG: fnu:FN0900 5.2e-32 metal dependent hydrolase. (262 aa) |
| | EEU95087.1 | Hypothetical protein; KEGG: spb:M28_Spy1090 5.0e-13 tRNA (uracil-5-)-methyltransferase K00599; Psort location: Cytoplasmic, score: 8.96. (60 aa) |
| | EEU95244.1 | Sigma-70 region 2; KEGG: reh:H16_A1096 3.3e-14 rpoE3; DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) K00960; Psort location: Cytoplasmic, score: 8.96; Belongs to the sigma-70 factor family. ECF subfamily. (180 aa) |
| | EEU97782.1 | KEGG: tte:TTE2333 1.9e-167 fusA2; translation elongation and release factors (GTPases) K02355; Psort location: Cytoplasmic, score: 9.97. (694 aa) |
| | EEU98004.1 | KEGG: btk:BT9727_0893 4.6e-07 CAAX amino terminal protease family protein (Ste24 endopeptidase) K06013; Psort location: CytoplasmicMembrane, score: 10.00. (300 aa) |
| | gluQ | Glutamyl-queuosine tRNA(Asp) synthetase; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2- cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon; Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily. (314 aa) |
| | serS | serine--tRNA ligase; KEGG: mhu:Mhun_2507 2.3e-86 seryl-tRNA synthetase K01875; Psort location: Cytoplasmic, score: 10.00. (443 aa) |
| | gidB | 16S rRNA methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. (235 aa) |
| | gidA | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. (624 aa) |
| | EEU95197.1 | ACT domain protein; KEGG: nph:NP5006A 3.7e-10 purU; formyltetrahydrofolate deformylase K01433. (94 aa) |
| | EEU95183.1 | RNAse H domain protein, YqgF family; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (143 aa) |
| | infC | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. (183 aa) |
| | rpmI | Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. (67 aa) |
| | rplT | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (116 aa) |
| | EEU95176.1 | RNA methyltransferase, TrmH family; KEGG: dar:Daro_1757 4.3e-28 spoU; tRNA/rRNA methyltransferase (SpoU) K03437; Psort location: Cytoplasmic, score: 8.96; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (259 aa) |
| | trmFO | tRNA:m(5)U-54 methyltransferase; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily. (458 aa) |
| | rnc | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (224 aa) |
| | lysS | lysine--tRNA ligase; KEGG: sar:SAR0518 5.5e-147 lysS; lysyl-tRNA synthetase K04567; Psort location: Cytoplasmic, score: 10.00; Belongs to the class-II aminoacyl-tRNA synthetase family. (503 aa) |
| | EEU95341.1 | RNA methyltransferase, TrmH family, group 3; KEGG: cpe:CPE2424 2.6e-53 probable tRNA/rRNA methyltransferase K03218; Psort location: Cytoplasmic, score: 8.96; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (267 aa) |
| | queH | Hypothetical protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr). (206 aa) |
| | lepB-2 | Signal peptidase I; KEGG: spk:MGAS9429_Spy0112 8.4e-25 signal peptidase I K03100; Belongs to the peptidase S26 family. (184 aa) |
| | EEU95492.1 | RNA polymerase sigma factor, sigma-70 family. (271 aa) |
| | hisS | histidine--tRNA ligase; KEGG: lxx:Lxx17220 4.3e-76 hisS; histidyl-tRNA synthetase K01892; Psort location: Cytoplasmic, score: 10.00; Belongs to the class-II aminoacyl-tRNA synthetase family. (426 aa) |
| | birA | biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. (320 aa) |
| | EEU95616.1 | Sigma-70 region 2; KEGG: reh:H16_A2563 7.9e-13 rpoE1; DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) K00960; Psort location: Cytoplasmic, score: 8.96; Belongs to the sigma-70 factor family. ECF subfamily. (176 aa) |
| | rpsP | Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (116 aa) |
| | EEU95590.1 | Putative fibronectin-binding protein; Psort location: Cytoplasmic, score: 8.96. (585 aa) |
| | rpsJ | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (103 aa) |
| | rplC | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (210 aa) |
| | rplD | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. (207 aa) |
| | rplW | Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (98 aa) |
| | rplB | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (276 aa) |
| | rpsS | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (88 aa) |
| | rplV | Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (111 aa) |
| | rpsC | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (234 aa) |
| | rplP | Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (146 aa) |
| | rpmC | Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. (61 aa) |
| | rpsQ | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (85 aa) |
| | rplN | Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa) |
| | rplX | Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. (104 aa) |
| | rplE | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (182 aa) |
| | rpsN | Ribosomal protein S14p/S29e; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. (61 aa) |
| | rpsH | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (132 aa) |
| | rplF | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (183 aa) |
| | rplR | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (119 aa) |
| | rpsE | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (166 aa) |
| | rpmD | Ribosomal protein L30. (61 aa) |
| | rplO | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (146 aa) |
| | infA | Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. (134 aa) |
| | rpmJ | Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. (37 aa) |
| | rpsM | 30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. (130 aa) |
| | rpsK | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (136 aa) |
| | rpsD | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (200 aa) |
| | rpoA | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (332 aa) |
| | rplQ | Ribosomal protein L17; Psort location: Cytoplasmic, score: 8.96. (113 aa) |
| | rimO | Ribosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. (441 aa) |
| | truA | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (249 aa) |
| | trpS | tryptophan--tRNA ligase; KEGG: bth:BT3864 3.9e-146 tryptophanyl-tRNA synthetase K01867; Psort location: Cytoplasmic, score: 9.97; Belongs to the class-I aminoacyl-tRNA synthetase family. (353 aa) |
| | thrS | threonine--tRNA ligase; KEGG: gka:GK2719 4.0e-167 thrS; threonyl-tRNA synthetase K01868; Psort location: Cytoplasmic, score: 10.00; Belongs to the class-II aminoacyl-tRNA synthetase family. (611 aa) |
| | EEU95720.1 | Hypothetical protein. (176 aa) |
| | trmB | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (250 aa) |
| | gltX | glutamate--tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu). (472 aa) |
| | EEU95837.1 | Rhodanese-like protein; KEGG: chu:CHU_2634 2.0e-14 naoX; NADH oxidase/rhodanese-related sulfurtransferase K00356; Psort location: Cytoplasmic, score: 8.96. (107 aa) |
| | tmcAL | Hypothetical protein; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of elongator tRNA(Met), using acetate and ATP as substrates. First activates an acetate ion to form acetyladenylate (Ac- AMP) and then transfers the acetyl group to tRNA to form ac(4)C34. (417 aa) |
| | EEU95891.1 | Hypothetical protein; KEGG: mta:Moth_0573 0.00010 ribosomal protein L11 methyltransferase K02687. (223 aa) |
| | EEU95926.1 | Sigma-70, region 4; KEGG: reh:H16_B1727 3.4e-12 prtI; DNA-directed RNA polymerase sigma subunit PrtI (ECF sigma factor) K00960; Psort location: Cytoplasmic, score: 8.96; Belongs to the sigma-70 factor family. ECF subfamily. (157 aa) |
| | EEU95924.1 | RNA methyltransferase, TrmH family; KEGG: bth:BT4513 9.5e-88 putative rRNA methylase K00599; Psort location: Cytoplasmic, score: 8.96. (275 aa) |
| | EEU95912.1 | Sigma-70 region 2; KEGG: reh:H16_A2563 0.00031 rpoE1; DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) K00960; Psort location: Cytoplasmic, score: 8.96; Belongs to the sigma-70 factor family. ECF subfamily. (181 aa) |
| | EEU95978.1 | Nucleic acid-binding domain protein; KEGG: pto:PTO1214 1.5e-19 aspartyl-tRNA synthetase K01876; Psort location: Cytoplasmic, score: 9.26. (179 aa) |
| | EEU95977.1 | tRNA ligases class II (D, K and N); KEGG: lxx:Lxx01320 5.4e-69 aspS; aspartyl-tRNA synthetase K01876; Psort location: Cytoplasmic, score: 10.00. (264 aa) |
| | EEU95958.1 | Sigma-70, region 4. (76 aa) |
| | EEU95957.1 | Sigma-70 region 2; KEGG: reh:H16_A2563 0.00011 rpoE1; DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) K00960; Belongs to the sigma-70 factor family. (84 aa) |
| | miaB | tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. (460 aa) |
| | miaA | tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (306 aa) |
| | ileS | isoleucine--tRNA ligase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily. (930 aa) |
| | EEU96025.1 | Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (314 aa) |
| | rplS | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (118 aa) |
| | lepB | Signal peptidase I; KEGG: ctc:CTC01253 7.5e-24 putative signal peptidase I K03100; Psort location: CytoplasmicMembrane, score: 9.82; Belongs to the peptidase S26 family. (183 aa) |
| | ybeY | Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (163 aa) |
| | tgt | tRNA-guanine transglycosylase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the [...] (381 aa) |
| | tyrS | tyrosine--tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. (405 aa) |
| | EEU96132.1 | Sigma-70, region 4; Psort location: Cytoplasmic, score: 8.96. (118 aa) |
| | EEU96156.1 | CAAX amino terminal protease family protein; Psort location: CytoplasmicMembrane, score: 10.00. (188 aa) |
| | rplU | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (106 aa) |
| | rpmA | Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. (83 aa) |
| | mrnC | RNase3 domain protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. (150 aa) |
| | EEU96184.1 | NOL1/NOP2/sun family protein; KEGG: lsl:LSL_0999 3.7e-38 putative 23S rRNA m(5)C methyltransferase K00599; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (232 aa) |
| | rnpA | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. (152 aa) |
| | EEU96220.1 | Hypothetical protein; KEGG: spi:MGAS10750_Spy1106 8.0e-06 putative 23S rRNA m(5)C methyltransferase K00599. (170 aa) |
| | frr | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. (184 aa) |
| | EEU96297.1 | Sigma-70, region 4; KEGG: bcz:BCZK3297 6.8e-07 RNA polymerase ECF-type sigma factor K03088; Psort location: Cytoplasmic, score: 8.96. (101 aa) |
| | EEU96324.1 | KEGG: reh:H16_A2563 1.0e-10 rpoE1; DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) K00960; Psort location: Cytoplasmic, score: 8.96; Belongs to the sigma-70 factor family. ECF subfamily. (149 aa) |
| | EEU96311.1 | RNA polymerase sigma factor, sigma-70 family; Psort location: Cytoplasmic, score: 8.96. (147 aa) |
| | EEU96346.1 | Peptidase, M22 family; KEGG: mta:Moth_1520 1.4e-47 O-sialoglycoprotein endopeptidase K01409; Psort location: Extracellular, score: 9.71. (312 aa) |
| | nusB | Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. (147 aa) |
| | EEU96425.1 | tRNA (Uracil-5-)-methyltransferase; KEGG: spr:spr0932 8.3e-57 putative RNA methyltransferase K00599; Psort location: Cytoplasmic, score: 8.96; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (259 aa) |
| | EEU96378.1 | RNA polymerase sigma factor, sigma-70 family; Psort location: Cytoplasmic, score: 8.96. (141 aa) |
| | EEU96375.1 | Sigma-70, region 4; Psort location: Cytoplasmic, score: 8.96. (142 aa) |
| | EEU96374.1 | Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (150 aa) |
| | EEU96373.1 | RNA polymerase sigma factor, sigma-70 family; Psort location: Cytoplasmic, score: 8.96. (165 aa) |
| | EEU96370.1 | Addiction module toxin, RelE/StbE family. (96 aa) |
| | rpsR | Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (71 aa) |
| | rpsF | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (94 aa) |
| | alaS | alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. (886 aa) |
| | EEU96532.1 | Pseudouridine synthase, RluA family; KEGG: cpe:CPE1204 2.9e-38 ribosomal large subunit pseudouridine synthase C K06179; Psort location: Cytoplasmic, score: 8.96; Belongs to the pseudouridine synthase RluA family. (316 aa) |
| | pnp | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (714 aa) |
| | rpsO | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (84 aa) |
| | truB | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. (295 aa) |
| | rbfA | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. (136 aa) |
| | infB | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. (825 aa) |
| | nusA | Transcription termination factor NusA; Participates in both transcription termination and antitermination. (358 aa) |
| | EEU96596.1 | Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (58 aa) |
| | EEU96592.1 | Putative glycine--tRNA ligase; KEGG: cpe:CPE2464 5.8e-104 glyS; glycine-tRNA ligase K01880; Psort location: Cytoplasmic, score: 10.00; overlaps another CDS with the same product name. (275 aa) |
| | EEU96591.1 | tRNA ligase class II core domain (G, H, P, S and T); KEGG: ctc:CTC00212 3.3e-62 glycyl-tRNA synthetase K01880; Psort location: Cytoplasmic, score: 9.97; overlaps another CDS with the same product name. (217 aa) |
| | rlmH | Putative rRNA large subunit m3Psi methyltransferase RlmH; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. (161 aa) |
| | metG | methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. (666 aa) |
| | EEU96599.1 | TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (340 aa) |
| | rpmF | Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. (59 aa) |
| | yqeV | tRNA methylthiotransferase YqeV; KEGG: ctc:CTC02027 6.8e-78 Fe-S oxidoreductase; Psort location: Cytoplasmic, score: 8.96. (409 aa) |
| | EEU96682.1 | Putative RNA methyltransferase, TrmH family, group 2; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. (174 aa) |
| | thiI | Thiamine biosynthesis/tRNA modification protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. (399 aa) |
| | efp | Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. (185 aa) |
| | rpsU | Ribosomal protein S21; Psort location: Cytoplasmic, score: 8.96; Belongs to the bacterial ribosomal protein bS21 family. (58 aa) |
| | leuS | leucine--tRNA ligase; KEGG: bld:BLi03175 1.2e-231 leuS; leucyl-tRNA synthetase; RBL03411 K01869; Psort location: Cytoplasmic, score: 9.97; Belongs to the class-I aminoacyl-tRNA synthetase family. (848 aa) |
| | EEU96781.1 | Putative RNA-binding protein, YhbY family. (98 aa) |
| | tsf | Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. (307 aa) |
| | rpsB | Ribosomal protein S2; Psort location: Cytoplasmic, score: 8.96; Belongs to the universal ribosomal protein uS2 family. (257 aa) |
| | EEU96744.1 | PP-loop family protein; KEGG: reh:H16_A0260 4.5e-33 predicted ATPase of the PP-loop superfamily implicated in cell cycle control K01529; Psort location: Cytoplasmic, score: 8.96; Belongs to the TtcA family. (284 aa) |
| | rpmE | Ribosomal protein L31; Binds the 23S rRNA. (66 aa) |
| | EEU96826.1 | Sua5/YciO/YrdC/YwlC family protein; Psort location: Cytoplasmic, score: 8.96. (302 aa) |
| | prfA | Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. (356 aa) |
| | EEU96823.1 | S1 RNA binding domain protein; KEGG: ctc:CTC01314 4.0e-08 conserved protein K03527; Psort location: Cytoplasmic, score: 8.96. (311 aa) |
| | yedF | Selenium metabolism protein YedF; Belongs to the sulfur carrier protein TusA family. (216 aa) |
| | rlmN | 23S rRNA m2A2503 methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family. (346 aa) |
| | sun | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. (440 aa) |
| | fmt | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. (306 aa) |
| | def | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. (178 aa) |
| | EEU96860.1 | TIGR00255 family protein; Psort location: CytoplasmicMembrane, score: 9.82. (305 aa) |
| | EEU96852.1 | Pseudouridylate synthase; KEGG: dsy:DSY2280 1.9e-50 hypothetical protein K06178; Psort location: Cytoplasmic, score: 8.96; Belongs to the pseudouridine synthase RsuA family. (294 aa) |
| | rpmB | Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (62 aa) |
| | EEU96890.1 | Sigma-70 region 2; KEGG: shn:Shewana3_0763 1.7e-10 RNA polymerase, sigma-24 subunit, ECF subfamily K00058; Belongs to the sigma-70 factor family. ECF subfamily. (170 aa) |
| | EEU96888.1 | Sigma-70, region 4; Psort location: Cytoplasmic, score: 8.96. (166 aa) |
| | EEU96983.1 | Sigma-70 region 2; KEGG: reh:H16_A2373 3.7e-11 rpoS; DNA-directed RNA polymerase sigma subunit (sigma38) K00960; Psort location: Cytoplasmic, score: 9.97; Belongs to the sigma-70 factor family. (153 aa) |
| | proS | proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). (479 aa) |
| | EEU97027.1 | KEGG: msy:MS53_0047 2.0e-58 fusA; elongation factor EF-G K02355; Psort location: Cytoplasmic, score: 9.97. (865 aa) |
| | ksgA | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. (320 aa) |
| | EEU97008.1 | Pseudouridylate synthase; KEGG: lsl:LSL_0445 1.4e-47 rsuA; ribosomal small subunit pseudouridine synthase A K06183; Belongs to the pseudouridine synthase RsuA family. (235 aa) |
| | EEU97054.1 | YbaK/EbsC protein; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily. (160 aa) |
| | EEU97038.1 | KEGG: bcc:BCc_016 2.8e-14 rpoH; RNA polymerase sigma-32 factor K00960; Psort location: Cytoplasmic, score: 8.96; Belongs to the sigma-70 factor family. (188 aa) |
| | EEU97037.1 | Putative RNA polymerase sigma-G factor; KEGG: reh:H16_A2373 2.0e-23 rpoS; DNA-directed RNA polymerase sigma subunit (sigma38) K00960; Psort location: Cytoplasmic, score: 9.97; Belongs to the sigma-70 factor family. (254 aa) |
| | EEU97029.1 | Hypothetical protein; KEGG: ctc:CTC00420 2.9e-70 methyltransferase K07444; Psort location: Cytoplasmic, score: 8.96; Belongs to the methyltransferase superfamily. (399 aa) |
| | EEU97028.1 | Hypothetical protein. (75 aa) |
| | EEU97063.1 | S1 RNA binding domain protein; KEGG: saa:SAUSA300_0486 4.3e-21 polyribonucleotide nucleotidyltransferase K00962; Psort location: Cytoplasmic, score: 9.26. (108 aa) |
| | EEU97124.1 | Hypothetical protein; KEGG: cno:NT01CX_2281 4.8e-13 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566; Psort location: Cytoplasmic, score: 8.96. (170 aa) |
| | rnj | Hypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (600 aa) |
| | rplI | Ribosomal protein L9; Binds to the 23S rRNA. (151 aa) |
| | tilS-2 | tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. (300 aa) |
| | tilS | tRNA(Ile)-lysidine synthetase domain protein; KEGG: tte:TTE2395 6.0e-09 mesJ3; predicted ATPase of the PP-loop superfamily implicated in cell cycle control K04075; Psort location: Cytoplasmic, score: 8.96. (192 aa) |
| | rimM | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes. (184 aa) |
| | trmD | tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. (410 aa) |
| | yeaZ | Universal bacterial protein YeaZ; KEGG: ctc:CTC02444 2.5e-23 O-sialoglycoprotein endopeptidase K01409. (243 aa) |
| | EEU97432.1 | Hydrolase, P-loop family; KEGG: cjk:jk1734 4.0e-09 alr; hypothetical protein K01775. (175 aa) |
| | EEU97380.1 | Acetyltransferase, GNAT family; KEGG: bce:BC2263 1.9e-11 ribosomal-protein-alanine acetyltransferase K00676. (173 aa) |
| | argS | arginine--tRNA ligase; KEGG: tte:TTE2533 1.7e-138 argS; arginyl-tRNA synthetase K01887; Psort location: Cytoplasmic, score: 9.26. (604 aa) |
| | rpmG | Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. (49 aa) |
| | nusG | Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination. (176 aa) |
| | rplK | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (141 aa) |
| | rplA | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (230 aa) |
| | rplJ | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (171 aa) |
| | rplL | Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (124 aa) |
| | tsaD | Putative glycoprotease GCP; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. (335 aa) |
| | EEU97279.1 | Pseudouridine synthase, RluA family; KEGG: lpl:lp_2221 3.8e-45 rluD2; pseudouridylate synthase K06180; Psort location: Cytoplasmic, score: 8.96. (305 aa) |
| | pheS | KEGG: tte:TTE1689 4.4e-99 pheS; phenylalanyl-tRNA synthetase alpha subunit K01889; Psort location: Cytoplasmic, score: 10.00. (340 aa) |
| | pheT | KEGG: tte:TTE1688 6.2e-155 pheT; phenylalanyl-tRNA synthetase beta subunit K01890; Psort location: Cytoplasmic, score: 9.97. (803 aa) |
| | smpB | SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] (160 aa) |
| | EEU97501.1 | Pseudouridine synthase, RluA family; KEGG: cpe:CPE1204 5.8e-49 ribosomal large subunit pseudouridine synthase C K06179; Belongs to the pseudouridine synthase RluA family. (365 aa) |
| | EEU97490.1 | RNA polymerase sigma factor, sigma-70 family; Psort location: Cytoplasmic, score: 8.96. (162 aa) |
| | rpoD | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (359 aa) |
| | trmE | tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. (456 aa) |
| | EEU97615.1 | KEGG: cno:NT01CX_1107 9.7e-89 rpoB; DNA-directed RNA polymerase, beta subunit K00960; Psort location: Cytoplasmic, score: 9.26; overlaps another CDS with the same product name. (292 aa) |
| | rpoB | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (998 aa) |
| | rpoC | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1191 aa) |
| | rpsL | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. (142 aa) |
| | rpsG | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa) |
| | fusA | Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...] (698 aa) |
| | tuf | Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (401 aa) |
| | EEU97597.1 | Putative ribonuclease M5; KEGG: cpe:CPE2518 6.4e-11 conserved hypothetical protein K05985. (205 aa) |
| | prfB | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. (373 aa) |
| | tadA | Cytidine and deoxycytidylate deaminase zinc-binding region; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (162 aa) |
| | sigA | Putative RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (461 aa) |
| | pth | aminoacyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. (257 aa) |
| | cysS | cysteine--tRNA ligase; KEGG: cno:NT01CX_1093 4.5e-129 cysS; cysteinyl-tRNA synthetase K01882; Psort location: Cytoplasmic, score: 9.97; Belongs to the class-I aminoacyl-tRNA synthetase family. (465 aa) |
| | EEU97721.1 | RNA methyltransferase, RsmD family; KEGG: fnu:FN1329 5.5e-28 methyltransferase K00599; Psort location: Cytoplasmic, score: 8.96. (189 aa) |
| | mraW | S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. (322 aa) |
| | lepA | GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. (603 aa) |
| | EEU97695.1 | PP-loop family protein; KEGG: hpa:HPAG1_1121 6.8e-30 hypothetical protein K01763; Psort location: Cytoplasmic, score: 8.96; Belongs to the TtcA family. (266 aa) |
| | rplM | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (142 aa) |
| | rpsI | Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (132 aa) |
