4 items (Faecalibacterium prausnitzii A2165)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rpsF	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (94 aa)
	dnaA	Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (440 aa)
	rpmE	Ribosomal protein L31; Binds the 23S rRNA. (66 aa)
	rpsB	Ribosomal protein S2; Psort location: Cytoplasmic, score: 8.96; Belongs to the universal ribosomal protein uS2 family. (257 aa)

Your Current Organism:

Faecalibacterium prausnitzii A2165

NCBI taxonomy Id: 411483
Other names: F. prausnitzii A2-165, Faecalibacterium prausnitzii A2-165

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rpmE	rpsB	FAEPRAA2165_01623	FAEPRAA2165_01649	Ribosomal protein L31; Binds the 23S rRNA.	Ribosomal protein S2; Psort location: Cytoplasmic, score: 8.96; Belongs to the universal ribosomal protein uS2 family.	0.988
rpmE	rpsF	FAEPRAA2165_01623	FAEPRAA2165_01974	Ribosomal protein L31; Binds the 23S rRNA.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.986
rpsB	rpmE	FAEPRAA2165_01649	FAEPRAA2165_01623	Ribosomal protein S2; Psort location: Cytoplasmic, score: 8.96; Belongs to the universal ribosomal protein uS2 family.	Ribosomal protein L31; Binds the 23S rRNA.	0.988
rpsB	rpsF	FAEPRAA2165_01649	FAEPRAA2165_01974	Ribosomal protein S2; Psort location: Cytoplasmic, score: 8.96; Belongs to the universal ribosomal protein uS2 family.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.999
rpsF	rpmE	FAEPRAA2165_01974	FAEPRAA2165_01623	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	Ribosomal protein L31; Binds the 23S rRNA.	0.986
rpsF	rpsB	FAEPRAA2165_01974	FAEPRAA2165_01649	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	Ribosomal protein S2; Psort location: Cytoplasmic, score: 8.96; Belongs to the universal ribosomal protein uS2 family.	0.999