(5 nodes) Mixed, incl. Polysaccharide biosynthesis protein, and Polyketide product template domain network (Trichoderma virens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G9MR64_HYPVG	Uncharacterized protein. (577 aa)
	G9MUW8_HYPVG	Carrier domain-containing protein. (718 aa)
	G9MWW4_HYPVG	Carrier domain-containing protein. (547 aa)
	G9N3D3_HYPVG	Non-ribosomal peptide synthetase. (1026 aa)
	G9NBV5_HYPVG	Putative polyketide synthase. (1736 aa)

Your Current Organism:

Trichoderma virens

NCBI taxonomy Id: 413071
Other names: T. virens Gv29-8, Trichoderma virens Gv29-8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G9MR64_HYPVG	G9MUW8_HYPVG	G9MR64	G9MUW8	Uncharacterized protein.	Carrier domain-containing protein.	0.489
G9MR64_HYPVG	G9MWW4_HYPVG	G9MR64	G9MWW4	Uncharacterized protein.	Carrier domain-containing protein.	0.533
G9MR64_HYPVG	G9N3D3_HYPVG	G9MR64	G9N3D3	Uncharacterized protein.	Non-ribosomal peptide synthetase.	0.575
G9MUW8_HYPVG	G9MR64_HYPVG	G9MUW8	G9MR64	Carrier domain-containing protein.	Uncharacterized protein.	0.489
G9MUW8_HYPVG	G9MWW4_HYPVG	G9MUW8	G9MWW4	Carrier domain-containing protein.	Carrier domain-containing protein.	0.868
G9MUW8_HYPVG	G9N3D3_HYPVG	G9MUW8	G9N3D3	Carrier domain-containing protein.	Non-ribosomal peptide synthetase.	0.510
G9MUW8_HYPVG	G9NBV5_HYPVG	G9MUW8	G9NBV5	Carrier domain-containing protein.	Putative polyketide synthase.	0.572
G9MWW4_HYPVG	G9MR64_HYPVG	G9MWW4	G9MR64	Carrier domain-containing protein.	Uncharacterized protein.	0.533
G9MWW4_HYPVG	G9MUW8_HYPVG	G9MWW4	G9MUW8	Carrier domain-containing protein.	Carrier domain-containing protein.	0.868
G9MWW4_HYPVG	G9N3D3_HYPVG	G9MWW4	G9N3D3	Carrier domain-containing protein.	Non-ribosomal peptide synthetase.	0.706
G9MWW4_HYPVG	G9NBV5_HYPVG	G9MWW4	G9NBV5	Carrier domain-containing protein.	Putative polyketide synthase.	0.719
G9N3D3_HYPVG	G9MR64_HYPVG	G9N3D3	G9MR64	Non-ribosomal peptide synthetase.	Uncharacterized protein.	0.575
G9N3D3_HYPVG	G9MUW8_HYPVG	G9N3D3	G9MUW8	Non-ribosomal peptide synthetase.	Carrier domain-containing protein.	0.510
G9N3D3_HYPVG	G9MWW4_HYPVG	G9N3D3	G9MWW4	Non-ribosomal peptide synthetase.	Carrier domain-containing protein.	0.706
G9N3D3_HYPVG	G9NBV5_HYPVG	G9N3D3	G9NBV5	Non-ribosomal peptide synthetase.	Putative polyketide synthase.	0.454
G9NBV5_HYPVG	G9MUW8_HYPVG	G9NBV5	G9MUW8	Putative polyketide synthase.	Carrier domain-containing protein.	0.572
G9NBV5_HYPVG	G9MWW4_HYPVG	G9NBV5	G9MWW4	Putative polyketide synthase.	Carrier domain-containing protein.	0.719
G9NBV5_HYPVG	G9N3D3_HYPVG	G9NBV5	G9N3D3	Putative polyketide synthase.	Non-ribosomal peptide synthetase.	0.454