(96 nodes) Biosynthesis of unsaturated fatty acids network (Trichoderma virens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G9MUR3_HYPVG	Beta-xylanase. (347 aa)
	G9MUT7_HYPVG	BZIP domain-containing protein. (163 aa)
	G9MUV4_HYPVG	Uncharacterized protein. (474 aa)
	G9MVB7_HYPVG	MFS domain-containing protein. (524 aa)
	G9MVF8_HYPVG	MFS domain-containing protein. (537 aa)
	G9MVY0_HYPVG	Uncharacterized protein. (154 aa)
	G9MWV4_HYPVG	MFS domain-containing protein. (519 aa)
	G9MX12_HYPVG	FA_desaturase domain-containing protein. (390 aa)
	G9MX29_HYPVG	MFS domain-containing protein. (498 aa)
	G9MX59_HYPVG	Uncharacterized protein. (303 aa)
	G9MXD6_HYPVG	APH domain-containing protein. (194 aa)
	G9MXJ1_HYPVG	Very-long-chain 3-oxoacyl-CoA reductase; Component of the microsomal membrane bound fatty acid elongation system, which produces the 26-carbon very long-chain fatty acids (VLCFA) from palmitate. Catalyzes the reduction of the 3- ketoacyl-CoA intermediate that is formed in each cycle of fatty acid elongation. VLCFAs serve as precursors for ceramide and sphingolipids. (334 aa)
	G9MY11_HYPVG	Uncharacterized protein. (477 aa)
	G9MYL6_HYPVG	Uncharacterized protein. (312 aa)
	G9MYR3_HYPVG	Nodulin-like domain-containing protein. (498 aa)
	G9MYU7_HYPVG	MFS domain-containing protein. (503 aa)
	G9MYY5_HYPVG	MFS domain-containing protein. (570 aa)
	G9MZX7_HYPVG	AB hydrolase-1 domain-containing protein. (297 aa)
	G9N054_HYPVG	MFS domain-containing protein. (490 aa)
	G9NDL6_HYPVG	MFS domain-containing protein. (503 aa)
	G9NDF4_HYPVG	Hydrolase_4 domain-containing protein. (313 aa)
	G9NDE1_HYPVG	F-box domain-containing protein. (1133 aa)
	G9ND27_HYPVG	MFS domain-containing protein. (546 aa)
	G9NCM4_HYPVG	Elongation of fatty acids protein. (441 aa)
	G9NC17_HYPVG	MFS domain-containing protein. (482 aa)
	G9NBY0_HYPVG	MFS domain-containing protein. (479 aa)
	G9NBD2_HYPVG	Beta-xylanase. (323 aa)
	G9NB45_HYPVG	IQ calmodulin-binding motif domain protein. (1005 aa)
	G9NAK1_HYPVG	Uncharacterized protein. (283 aa)
	G9NA05_HYPVG	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase; Catalyzes the third of the four reactions of the long-chain fatty acids elongation cycle. This endoplasmic reticulum-bound enzymatic process, allows the addition of two carbons to the chain of long- and very long-chain fatty acids/VLCFAs per cycle. This enzyme catalyzes the dehydration of the 3-hydroxyacyl-CoA intermediate into trans-2,3-enoyl-CoA, within each cycle of fatty acid elongation. Thereby, it participates to the production of VLCFAs of different chain lengths that are involved in multiple biological processes as precursors [...] (229 aa)
	G9N9Y8_HYPVG	S5A_REDUCTASE domain-containing protein. (307 aa)
	G9N9X0_HYPVG	APH domain-containing protein. (329 aa)
	G9N9N4_HYPVG	MFS domain-containing protein. (599 aa)
	G9N9M0_HYPVG	Uncharacterized protein. (308 aa)
	G9N998_HYPVG	Zn(2)-C6 fungal-type domain-containing protein. (581 aa)
	G9N933_HYPVG	MFS domain-containing protein. (475 aa)
	G9N901_HYPVG	Zn(2)-C6 fungal-type domain-containing protein. (870 aa)
	G9N8E0_HYPVG	APH domain-containing protein. (325 aa)
	G9N6K4_HYPVG	MFS domain-containing protein. (543 aa)
	G9N633_HYPVG	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (419 aa)
	G9N5X3_HYPVG	Uncharacterized protein. (423 aa)
	G9N5R7_HYPVG	MFS domain-containing protein. (576 aa)
	G9N5E4_HYPVG	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (270 aa)
	G9N5A4_HYPVG	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (463 aa)
	G9N520_HYPVG	Uncharacterized protein. (478 aa)
	G9N4Y1_HYPVG	Uncharacterized protein. (228 aa)
	G9N4J4_HYPVG	MFS domain-containing protein. (461 aa)
	G9N4D7_HYPVG	Cytochrome b5 heme-binding domain-containing protein. (539 aa)
	G9N3U4_HYPVG	MFS domain-containing protein. (463 aa)
	G9N3E7_HYPVG	Peptidase_S15 domain-containing protein. (287 aa)
	G9N3E4_HYPVG	Hydrolase_4 domain-containing protein. (162 aa)
	G9N390_HYPVG	Uncharacterized protein. (1102 aa)
	G9N343_HYPVG	MFS domain-containing protein. (623 aa)
	G9N2V3_HYPVG	MFS domain-containing protein. (494 aa)
	G9N2R7_HYPVG	MFS domain-containing protein. (458 aa)
	G9N2I1_HYPVG	MFS domain-containing protein. (479 aa)
	G9N2H3_HYPVG	MFS domain-containing protein. (615 aa)
	G9N283_HYPVG	Abhydrolase_3 domain-containing protein. (403 aa)
	G9N200_HYPVG	Uncharacterized protein. (240 aa)
	G9MSF7_HYPVG	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates. (476 aa)
	G9MSI2_HYPVG	Uncharacterized protein. (167 aa)
	G9MSW1_HYPVG	MFS domain-containing protein. (489 aa)
	G9MTZ2_HYPVG	HET domain-containing protein. (848 aa)
	G9MU31_HYPVG	MFS domain-containing protein. (577 aa)
	G9MU33_HYPVG	MFS domain-containing protein. (512 aa)
	G9MU96_HYPVG	MFS domain-containing protein. (506 aa)
	G9MUD9_HYPVG	MFS domain-containing protein. (386 aa)
	G9MUJ2_HYPVG	Hydrolase_4 domain-containing protein. (304 aa)
	G9MUS9_HYPVG	Uncharacterized protein. (271 aa)
	G9MDI1_HYPVG	MFS domain-containing protein. (594 aa)
	G9MDT6_HYPVG	Elongation of fatty acids protein. (343 aa)
	G9MDV8_HYPVG	Uncharacterized protein. (235 aa)
	G9MEQ1_HYPVG	MFS domain-containing protein. (512 aa)
	G9MER3_HYPVG	MFS domain-containing protein. (492 aa)
	G9MF24_HYPVG	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (414 aa)
	G9MF88_HYPVG	MFS domain-containing protein. (498 aa)
	G9MF95_HYPVG	MFS domain-containing protein. (613 aa)
	G9MGG1_HYPVG	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (458 aa)
	G9MGR2_HYPVG	Elongation of fatty acids protein. (329 aa)
	G9MH93_HYPVG	MFS domain-containing protein. (457 aa)
	G9MHL2_HYPVG	SCP2 domain-containing protein. (126 aa)
	G9MIS2_HYPVG	AB hydrolase-1 domain-containing protein. (394 aa)
	G9ML51_HYPVG	Uncharacterized protein. (212 aa)
	G9MMD6_HYPVG	cAMP-mediated signaling protein SOK1. (658 aa)
	G9MMP3_HYPVG	MFS domain-containing protein. (590 aa)
	G9MN03_HYPVG	AB hydrolase-1 domain-containing protein. (319 aa)
	G9MN68_HYPVG	Uncharacterized protein. (466 aa)
	G9MP18_HYPVG	Uncharacterized protein. (920 aa)
	G9MPE9_HYPVG	Uncharacterized protein. (282 aa)
	G9MPF9_HYPVG	MFS domain-containing protein. (485 aa)
	G9MPR5_HYPVG	Zn(2)-C6 fungal-type domain-containing protein. (669 aa)
	G9MPR7_HYPVG	MFS domain-containing protein. (424 aa)
	G9MPT8_HYPVG	BZIP domain-containing protein. (576 aa)
	G9MQA9_HYPVG	Cytochrome b5 heme-binding domain-containing protein. (573 aa)
	G9MQG3_HYPVG	Uncharacterized protein. (255 aa)
	G9MQU3_HYPVG	BZIP domain-containing protein. (279 aa)

Your Current Organism:

Trichoderma virens

NCBI taxonomy Id: 413071
Other names: T. virens Gv29-8, Trichoderma virens Gv29-8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G9MDI1_HYPVG	G9MSF7_HYPVG	G9MDI1	G9MSF7	MFS domain-containing protein.	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	0.604
G9MDT6_HYPVG	G9MF24_HYPVG	G9MDT6	G9MF24	Elongation of fatty acids protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.448
G9MDT6_HYPVG	G9MGR2_HYPVG	G9MDT6	G9MGR2	Elongation of fatty acids protein.	Elongation of fatty acids protein.	0.887
G9MDT6_HYPVG	G9MP18_HYPVG	G9MDT6	G9MP18	Elongation of fatty acids protein.	Uncharacterized protein.	0.448
G9MDT6_HYPVG	G9MPT8_HYPVG	G9MDT6	G9MPT8	Elongation of fatty acids protein.	BZIP domain-containing protein.	0.441
G9MDT6_HYPVG	G9MQA9_HYPVG	G9MDT6	G9MQA9	Elongation of fatty acids protein.	Cytochrome b5 heme-binding domain-containing protein.	0.677
G9MDT6_HYPVG	G9MQU3_HYPVG	G9MDT6	G9MQU3	Elongation of fatty acids protein.	BZIP domain-containing protein.	0.441
G9MDT6_HYPVG	G9MSF7_HYPVG	G9MDT6	G9MSF7	Elongation of fatty acids protein.	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	0.944
G9MDT6_HYPVG	G9MTZ2_HYPVG	G9MDT6	G9MTZ2	Elongation of fatty acids protein.	HET domain-containing protein.	0.515
G9MDT6_HYPVG	G9MUT7_HYPVG	G9MDT6	G9MUT7	Elongation of fatty acids protein.	BZIP domain-containing protein.	0.441
G9MDT6_HYPVG	G9MXD6_HYPVG	G9MDT6	G9MXD6	Elongation of fatty acids protein.	APH domain-containing protein.	0.556
G9MDT6_HYPVG	G9MXJ1_HYPVG	G9MDT6	G9MXJ1	Elongation of fatty acids protein.	Very-long-chain 3-oxoacyl-CoA reductase; Component of the microsomal membrane bound fatty acid elongation system, which produces the 26-carbon very long-chain fatty acids (VLCFA) from palmitate. Catalyzes the reduction of the 3- ketoacyl-CoA intermediate that is formed in each cycle of fatty acid elongation. VLCFAs serve as precursors for ceramide and sphingolipids.	0.915
G9MDT6_HYPVG	G9N4D7_HYPVG	G9MDT6	G9N4D7	Elongation of fatty acids protein.	Cytochrome b5 heme-binding domain-containing protein.	0.677
G9MDT6_HYPVG	G9N5E4_HYPVG	G9MDT6	G9N5E4	Elongation of fatty acids protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.754
G9MDT6_HYPVG	G9N633_HYPVG	G9MDT6	G9N633	Elongation of fatty acids protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.649
G9MDT6_HYPVG	G9N8E0_HYPVG	G9MDT6	G9N8E0	Elongation of fatty acids protein.	APH domain-containing protein.	0.556
G9MDT6_HYPVG	G9N9X0_HYPVG	G9MDT6	G9N9X0	Elongation of fatty acids protein.	APH domain-containing protein.	0.556
G9MDT6_HYPVG	G9N9Y8_HYPVG	G9MDT6	G9N9Y8	Elongation of fatty acids protein.	S5A_REDUCTASE domain-containing protein.	0.931
G9MDT6_HYPVG	G9NA05_HYPVG	G9MDT6	G9NA05	Elongation of fatty acids protein.	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase; Catalyzes the third of the four reactions of the long-chain fatty acids elongation cycle. This endoplasmic reticulum-bound enzymatic process, allows the addition of two carbons to the chain of long- and very long-chain fatty acids/VLCFAs per cycle. This enzyme catalyzes the dehydration of the 3-hydroxyacyl-CoA intermediate into trans-2,3-enoyl-CoA, within each cycle of fatty acid elongation. Thereby, it participates to the production of VLCFAs of different chain lengths that are involved in multiple biological processes as precursors [...]	0.904
G9MDT6_HYPVG	G9NCM4_HYPVG	G9MDT6	G9NCM4	Elongation of fatty acids protein.	Elongation of fatty acids protein.	0.652