STRINGSTRING
hppA hppA lysA lysA ispE ispE priA priA ybeY ybeY rnfC rnfC Rmag_0159 Rmag_0159 rpsL rpsL rpsG rpsG rpsJ rpsJ rplC rplC rplD rplD rplW rplW rplB rplB rpsS rpsS rplV rplV rpsC rpsC rplP rplP rpmC rpmC rpsQ rpsQ rplN rplN rplX rplX rplE rplE rpsN rpsN rpsH rpsH rplF rplF rplR rplR rpsE rpsE rpmD rpmD rplO rplO rpmJ rpmJ dnaA dnaA Rmag_0016 Rmag_0016 Rmag_0019 Rmag_0019 Rmag_0029 Rmag_0029 Rmag_0032 Rmag_0032 Rmag_0036 Rmag_0036 rpsM rpsM rpsK rpsK rpsD rpsD rplQ rplQ rpsU rpsU argB argB Rmag_0268 Rmag_0268 rpsO rpsO dnaG dnaG Rmag_0303 Rmag_0303 Rmag_0308 Rmag_0308 Rmag_0312 Rmag_0312 nadD nadD selO selO dinG dinG rnhA rnhA Rmag_0380 Rmag_0380 Rmag_0400 Rmag_0400 dnaQ dnaQ Rmag_0414 Rmag_0414 dksA dksA Rmag_0428 Rmag_0428 Rmag_0438 Rmag_0438 Rmag_0455 Rmag_0455 guaB guaB Rmag_0468 Rmag_0468 rpmF rpmF Rmag_0487 Rmag_0487 bioB bioB hemH hemH Rmag_0528 Rmag_0528 Rmag_0548 Rmag_0548 Rmag_0591 Rmag_0591 Rmag_0592 Rmag_0592 Rmag_0641 Rmag_0641 rplT rplT rpmI rpmI rpsF rpsF rpsR rpsR rplI rplI Rmag_0667 Rmag_0667 Rmag_0686 Rmag_0686 Rmag_0700 Rmag_0700 Rmag_0701 Rmag_0701 hemA hemA Rmag_0744 Rmag_0744 rpsT rpsT Rmag_0794 Rmag_0794 Rmag_0799 Rmag_0799 rplL rplL rplJ rplJ rplA rplA rplK rplK nusG nusG rplS rplS tadA tadA rpmA rpmA rplU rplU Rmag_0926 Rmag_0926 rpsI rpsI rplM rplM nth nth Rmag_0956 Rmag_0956 Rmag_0968 Rmag_0968 truA truA rpsP rpsP rpmG rpmG rpmB rpmB rpmE rpmE rpmH rpmH argC argC rplY rplY ychF ychF rpsB rpsB Rmag_0038 Rmag_0038 Rmag_0046 Rmag_0046 nusA nusA infB infB purD purD sat sat
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
hppAV-type H(+)-translocating pyrophosphatase; Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force. (666 aa)
lysADiaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. (415 aa)
ispE4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. (285 aa)
priAPrimosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (654 aa)
ybeYProtein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (145 aa)
rnfCElectron transport complex, RnfABCDGE type, C subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily. (497 aa)
Rmag_0159PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: bbr:BB2274 low molecular weight protein-tyrosine-phosphatase. (147 aa)
rpsLSSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy. (124 aa)
rpsGSSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (157 aa)
rpsJSSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (103 aa)
rplCLSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (238 aa)
rplDLSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. (204 aa)
rplWLSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (96 aa)
rplBLSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (276 aa)
rpsSSSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (89 aa)
rplVLSU ribosomal protein L22P; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). (110 aa)
rpsCSSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (232 aa)
rplPLSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (136 aa)
rpmCPFAM: ribosomal protein L29; KEGG: tcx:Tcr_0303 ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. (62 aa)
rpsQSSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (88 aa)
rplNLSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa)
rplXLSU ribosomal protein L24P; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (103 aa)
rplELSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (179 aa)
rpsNSSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. (101 aa)
rpsHSSU ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (131 aa)
rplFLSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (181 aa)
rplRLSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (115 aa)
rpsESSU ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. (172 aa)
rpmDPFAM: ribosomal protein L30; KEGG: cps:CPS_0619 ribosomal protein L30. (106 aa)
rplOLSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (147 aa)
rpmJPFAM: ribosomal protein L36; KEGG: vpa:VP0278 ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. (37 aa)
dnaAChromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (430 aa)
Rmag_0016TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; KEGG: son:SO3533 riboflavin biosynthesis protein RibF; Belongs to the ribF family. (300 aa)
Rmag_0019KEGG: noc:Noc_2702 hypothetical protein. (278 aa)
Rmag_0029KEGG: neu:NE1011 putative transmembrane protein. (176 aa)
Rmag_0032PFAM: cytochrome oxidase assembly; KEGG: noc:Noc_3040 cytochrome oxidase assembly. (323 aa)
Rmag_0036PFAM: cytochrome c oxidase assembly protein CtaG/Cox11; KEGG: mca:MCA0882 cytochrome c oxidase assembly protein, putative. (177 aa)
rpsMSSU ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. (117 aa)
rpsKSSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (127 aa)
rpsDSSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (208 aa)
rplQPFAM: ribosomal protein L17; KEGG: ppr:PBPRA0346 putative ribosomal protein L17. (132 aa)
rpsUPFAM: ribosomal protein S21; KEGG: tcx:Tcr_1809 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. (71 aa)
argBN-acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. (296 aa)
Rmag_0268Regulatory inactivation of DnaA Hda protein; PFAM: Chromosomal replication initiator, DnaA; KEGG: cbu:CBU_1734 chromosomal replication initiator protein DnaA; Belongs to the DnaA family. (224 aa)
rpsOSSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. (86 aa)
dnaGDNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (593 aa)
Rmag_0303preQ(0) biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: tcx:Tcr_1389 6-pyruvoyl tetrahydropterin synthase and hypothetical protein. (125 aa)
Rmag_0308PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: xcb:XC_0132 deoxycytidylate deaminase. (148 aa)
Rmag_0312Alanine-glyoxylate aminotransferase apoenzyme; PFAM: aminotransferase, class V; KEGG: cps:CPS_2190 aminotransferase, class V. (372 aa)
nadDNicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (225 aa)
selOProtein of unknown function UPF0061; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family. (457 aa)
dinGHelicase c2; DNA-dependent ATPase and 5'-3' DNA helicase. (685 aa)
rnhARibonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (146 aa)
Rmag_0380Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. (91 aa)
Rmag_0400PFAM: LemA family protein; KEGG: sde:Sde_3150 divalent cation transporter. (202 aa)
dnaQDNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. (222 aa)
Rmag_0414KEGG: hit:NTHI0077 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK. (157 aa)
dksATranscriptional regulator TraR/DksA family; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression. (136 aa)
Rmag_0428PFAM: heat shock protein Hsp20; KEGG: rfe:RF_1004 small heat shock protein; Belongs to the small heat shock protein (HSP20) family. (162 aa)
Rmag_0438PFAM: protein of unknown function DUF185; KEGG: noc:Noc_0037 protein of unknown function DUF185. (364 aa)
Rmag_0455Magnesium transporter; Acts as a magnesium transporter. (450 aa)
guaBInosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. (486 aa)
Rmag_0468PFAM: aminoglycoside phosphotransferase; KEGG: neu:NE0191 domain of unknown function DUF227. (314 aa)
rpmFTIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: neu:NE1644 probable 50S ribosomal subunit protein L32; Belongs to the bacterial ribosomal protein bL32 family. (65 aa)
Rmag_0487PFAM: phospholipid/glycerol acyltransferase; KEGG: mfa:Mfla_0642 phospholipid/glycerol acyltransferase. (233 aa)
bioBBiotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. (322 aa)
hemHFerrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. (331 aa)
Rmag_0528PFAM: GCN5-related N-acetyltransferase; KEGG: reu:Reut_A2066 amino-acid N-acetyltransferase (ArgA); Belongs to the acetyltransferase family. (140 aa)
Rmag_0548PFAM: ApaG domain protein; KEGG: neu:NE1573 ApaG protein. (123 aa)
Rmag_0591Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. (101 aa)
Rmag_0592SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. (558 aa)
Rmag_0641Histone family protein DNA-binding protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. (95 aa)
rplTLSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (119 aa)
rpmIPFAM: ribosomal protein L35; KEGG: ilo:IL1397 ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. (66 aa)
rpsFSSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. (113 aa)
rpsRSSU ribosomal protein S18P; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (84 aa)
rplILSU ribosomal protein L9P; Binds to the 23S rRNA. (150 aa)
Rmag_0667Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (481 aa)
Rmag_0686PFAM: protein kinase; protein phosphatase 2C domain protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: hch:HCH_05817 serine/threonine protein kinase. (566 aa)
Rmag_0700CbbQ/NirQ/NorQ C-terminal domain protein; PFAM: ATPase associated with various cellular activities, AAA_5; CbbQ/NirQ/NorQ C-terminal domain protein; SMART: AAA ATPase; KEGG: tcx:Tcr_0423 ATPase associated with various cellular activities, AAA_5. (269 aa)
Rmag_0701Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; PFAM: ribulose bisphosphate carboxylase, large chain; KEGG: tcx:Tcr_0424 ribulose-bisphosphate carboxylase; Belongs to the RuBisCO large chain family. (460 aa)
hemAglutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). (416 aa)
Rmag_0744PFAM: electron transport protein SCO1/SenC; KEGG: rbe:RBE_0699 Sco2 protein precursor. (224 aa)
rpsTSSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA. (97 aa)
Rmag_0794TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell division protein FtsA; cell shape determining protein MreB/Mrl; KEGG: cbu:CBU_1471 rod shape-determining protein MreB. (343 aa)
Rmag_0799PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3493 ABC transporter related. (598 aa)
rplLLSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (125 aa)
rplJLSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (170 aa)
rplALSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (231 aa)
rplKLSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (142 aa)
nusGTranscription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. (177 aa)
rplSLSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (117 aa)
tadACMP/dCMP deaminase, zinc-binding protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (156 aa)
rpmAPFAM: ribosomal protein L27; KEGG: vch:VC0436 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. (85 aa)
rplULSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (103 aa)
Rmag_0926Hypothetical protein. (81 aa)
rpsIPFAM: ribosomal protein S9; KEGG: cps:CPS_4442 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (131 aa)
rplMLSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (142 aa)
nthDNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (210 aa)
Rmag_0956TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: noc:Noc_0038 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HppK. (160 aa)
Rmag_0968DNA-binding protein Fis; PFAM: helix-turn-helix, Fis-type; KEGG: mfa:Mfla_0350 helix-turn-helix, fis-type. (76 aa)
truAtRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (247 aa)
rpsPPFAM: ribosomal protein S16; KEGG: lpp:lpp0466 hypothetical protein; Belongs to the bacterial ribosomal protein bS16 family. (91 aa)
rpmGPFAM: ribosomal protein L33; KEGG: hch:HCH_01018 ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. (51 aa)
rpmBPFAM: ribosomal protein L28; KEGG: sde:Sde_3679 50S ribosomal subunit protein L28; Belongs to the bacterial ribosomal protein bL28 family. (78 aa)
rpmELSU ribosomal protein L31P; Binds the 23S rRNA. (91 aa)
rpmHPFAM: ribosomal protein L34; KEGG: vvy:VV0005 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. (46 aa)
argCN-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. (340 aa)
rplYLSU ribosomal protein L25P; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (222 aa)
ychFGTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (363 aa)
rpsBPFAM: ribosomal protein S2; KEGG: pae:PA3656 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. (312 aa)
Rmag_0038KEGG: mca:MCA0131 hypothetical protein. (248 aa)
Rmag_0046Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (142 aa)
nusANusA antitermination factor; Participates in both transcription termination and antitermination. (491 aa)
infBBacterial translation initiation factor 2 (bIF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. (815 aa)
purDKEGG: vpa:VP2898 phosphoribosylamine-glycine ligase; TIGRFAM: phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase; Belongs to the GARS family. (423 aa)
satKEGG: tbd:Tbd_0874 ATP-sulfurylase; TIGRFAM: sulfate adenylyltransferase; PFAM: ATP-sulfurylase; Belongs to the sulfate adenylyltransferase family. (402 aa)
Your Current Organism:
Ruthia magnifica
NCBI taxonomy Id: 413404
Other names: C. Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica strain Cm (Calyptogena magnifica), Ruthia magnifica str. Cm (Calyptogena magnifica)
Server load: low (34%) [HD]