(65 nodes) Mixed, incl. Latent infection - Other responses of Mtb to phagocytosis, and Solute-binding protein family 3/N-terminal domain of MltF network (Polyangium brachysporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AAW51_0065	ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily. (569 aa)
	AAW51_0066	Peptide ABC transporter permease. (347 aa)
	AAW51_0067	Peptide ABC transporter permease. (312 aa)
	AAW51_0068	Bicyclomycin resistance protein. (595 aa)
	AAW51_0118	Multidrug transporter. (473 aa)
	AAW51_0255	ABC transporter permease. (217 aa)
	fliY	Cysteine ABC transporter substrate-binding protein. (266 aa)
	ydjE-2	Sugar phosphate permease. (531 aa)
	AAW51_0860	ABC transporter substrate-binding protein. (528 aa)
	gltI	Amino acid ABC transporter substrate-binding protein. (302 aa)
	gltI-2	ABC transporter substrate-binding protein. (297 aa)
	gltJ	Glutamate ABC transporter permease. (236 aa)
	gltK	Amino acid ABC transporter permease. (221 aa)
	gltL	Amino acid ABC transporter ATP-binding protein. (244 aa)
	ampD	anhydro-N-acetylmuramyl-tripeptide amidase. (208 aa)
	AAW51_1604	Membrane protein. (294 aa)
	AAW51_1832	Hypothetical protein. (118 aa)
	AAW51_1833	Hypothetical protein. (288 aa)
	AAW51_1834	Hypothetical protein. (244 aa)
	AAW51_1835	Hypothetical protein. (389 aa)
	AAW51_1836	Hypothetical protein. (247 aa)
	metN	Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (349 aa)
	metI	Metal ABC transporter permease. (219 aa)
	metQ	Methionine ABC transporter substrate-binding protein. (259 aa)
	glbN-2	Hemoglobin. (121 aa)
	AAW51_2445	Amino acid ABC transporter substrate-binding protein; ABC.PA.S. (246 aa)
	AAW51_2447	ABC transporter substrate-binding protein; ABC.PA.S. (243 aa)
	AAW51_2502	Hypothetical protein. (83 aa)
	tadA	tRNA(adenine34) deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (195 aa)
	ldcA	Muramoyltetrapeptide carboxypeptidase. (323 aa)
	AAW51_2505	Peptide ABC transporter substrate-binding protein. (745 aa)
	AAW51_2506	Peptide ABC transporter permease; ABC.PE.P. (327 aa)
	AAW51_2507	Peptide ABC transporter permease; ABC.PE.P1. (482 aa)
	AAW51_2508	ABC transporter ATP-binding protein; ABC.PE.A1; Belongs to the ABC transporter superfamily. (629 aa)
	AAW51_2509	Hypothetical protein. (182 aa)
	AAW51_2510	Hypothetical protein. (64 aa)
	AAW51_2511	Mobile element protein. (52 aa)
	AAW51_2939	Hypothetical protein. (267 aa)
	qor-2	Quinone oxidoreductase. (341 aa)
	AAW51_3814	Hypothetical protein. (102 aa)
	AAW51_3815	Membrane protein. (295 aa)
	AAW51_3817	Hypothetical protein. (155 aa)
	AAW51_3819	Multidrug DMT transporter permease. (305 aa)
	AAW51_3821	Membrane protein. (424 aa)
	AAW51_4707	Membrane protein. (303 aa)
	AAW51_4772	ABC transporter ATP-binding protein; ABC.PE.A1; Belongs to the ABC transporter superfamily. (334 aa)
	AAW51_4773	Methionine ABC transporter ATP-binding protein; ABC.PE.A; Belongs to the ABC transporter superfamily. (330 aa)
	AAW51_4774	ABC transporter permease; ABC.PE.P1. (304 aa)
	AAW51_4775	ABC transporter substrate-binding protein; ABC.PE.S. (523 aa)
	hipO-3	Amidohydrolase. (410 aa)
	AAW51_4777	ABC transporter permease; ABC.PE.P. (326 aa)
	AAW51_4778	ABC transporter substrate-binding protein; ABC.PE.S. (531 aa)
	anmK	anhydro-N-acetylmuramic acid kinase; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family. (370 aa)
	AAW51_4826	Amino acid ABC transporter permease; ABC.PA.P. (250 aa)
	AAW51_4827	ABC transporter substrate-binding protein; ABC.PA.S; Belongs to the bacterial solute-binding protein 3 family. (294 aa)
	AAW51_4870	Multidrug resistance protein, MATE family; TC.MATE. (467 aa)
	cutA	Periplasmic divalent cation tolerance protein. (113 aa)
	nodJ	Nodulation protein NodJ. (262 aa)
	nodI	ABC transporter ATP-binding protein; Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4- linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system. (316 aa)
	AAW51_5339	ABC transporter substrate-binding protein; ABC.PE.S. (497 aa)
	AAW51_5340	Peptide ABC transporter ATP-binding protein; ABC.PE.A1; Belongs to the ABC transporter superfamily. (294 aa)
	AAW51_5341	ABC.PE.A; Belongs to the ABC transporter superfamily. (339 aa)
	AAW51_5342	Dipeptide transport system permease protein DppC. (168 aa)
	AAW51_5343	Dipeptide transport system permease protein DppC. (129 aa)
	AAW51_5344	ABC transporter permease; ABC.PE.P. (320 aa)

Your Current Organism:

Polyangium brachysporum

NCBI taxonomy Id: 413882
Other names: ATCC 53080, DSM 7029, NBRC 100090, [. brachysporum, [Polyangium] brachysporum, strain K481-B101

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AAW51_0065	AAW51_0066	AAW51_0065	AAW51_0066	ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide ABC transporter permease.	0.937
AAW51_0065	AAW51_0067	AAW51_0065	AAW51_0067	ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide ABC transporter permease.	0.940
AAW51_0065	AAW51_0068	AAW51_0065	AAW51_0068	ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Bicyclomycin resistance protein.	0.796
AAW51_0065	AAW51_0860	AAW51_0065	AAW51_0860	ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter substrate-binding protein.	0.432
AAW51_0065	AAW51_2506	AAW51_0065	AAW51_2506	ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide ABC transporter permease; ABC.PE.P.	0.819
AAW51_0065	AAW51_2507	AAW51_0065	AAW51_2507	ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide ABC transporter permease; ABC.PE.P1.	0.779
AAW51_0065	AAW51_4774	AAW51_0065	AAW51_4774	ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter permease; ABC.PE.P1.	0.888
AAW51_0065	AAW51_4775	AAW51_0065	AAW51_4775	ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter substrate-binding protein; ABC.PE.S.	0.416
AAW51_0065	AAW51_4777	AAW51_0065	AAW51_4777	ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter permease; ABC.PE.P.	0.827
AAW51_0065	AAW51_5339	AAW51_0065	AAW51_5339	ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter substrate-binding protein; ABC.PE.S.	0.415
AAW51_0065	AAW51_5342	AAW51_0065	AAW51_5342	ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Dipeptide transport system permease protein DppC.	0.949
AAW51_0065	AAW51_5344	AAW51_0065	AAW51_5344	ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter permease; ABC.PE.P.	0.835
AAW51_0066	AAW51_0065	AAW51_0066	AAW51_0065	Peptide ABC transporter permease.	ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.937
AAW51_0066	AAW51_0067	AAW51_0066	AAW51_0067	Peptide ABC transporter permease.	Peptide ABC transporter permease.	0.981
AAW51_0066	AAW51_0068	AAW51_0066	AAW51_0068	Peptide ABC transporter permease.	Bicyclomycin resistance protein.	0.904
AAW51_0066	AAW51_0860	AAW51_0066	AAW51_0860	Peptide ABC transporter permease.	ABC transporter substrate-binding protein.	0.671
AAW51_0066	AAW51_2505	AAW51_0066	AAW51_2505	Peptide ABC transporter permease.	Peptide ABC transporter substrate-binding protein.	0.606
AAW51_0066	AAW51_2506	AAW51_0066	AAW51_2506	Peptide ABC transporter permease.	Peptide ABC transporter permease; ABC.PE.P.	0.904
AAW51_0066	AAW51_2508	AAW51_0066	AAW51_2508	Peptide ABC transporter permease.	ABC transporter ATP-binding protein; ABC.PE.A1; Belongs to the ABC transporter superfamily.	0.835
AAW51_0066	AAW51_4772	AAW51_0066	AAW51_4772	Peptide ABC transporter permease.	ABC transporter ATP-binding protein; ABC.PE.A1; Belongs to the ABC transporter superfamily.	0.932