(42 nodes) Amino acid transport, and ABC transporter, permease network (Polyangium brachysporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	livK	Branched-chain amino acid transport system substrate-binding protein. (398 aa)
	livK-2	Amino acid ABC transporter substrate-binding protein. (404 aa)
	livH	ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. (289 aa)
	livM	ABC transporter; Belongs to the binding-protein-dependent transport system permease family. (660 aa)
	livF	ABC transporter ATP-binding protein. (240 aa)
	livK-3	ABC transporter permease. (415 aa)
	AAW51_1540	ABC transporter permease. (372 aa)
	livK-4	ABC transporter substrate-binding protein. (379 aa)
	livK-5	ABC transporter permease. (439 aa)
	livK-6	Branched-chain amino acid ABC transporter substrate-binding protein. (412 aa)
	livH-2	ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. (346 aa)
	livM-2	ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. (431 aa)
	livG	Branched-chain amino acid ABC transporter substrate-binding protein. (256 aa)
	livF-2	Mannosyltransferase. (234 aa)
	livK-7	ABC transporter substrate-binding protein. (382 aa)
	livK-8	Branched-chain amino acid ABC transporter substrate-binding protein. (379 aa)
	feaB	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (491 aa)
	livH-3	ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. (276 aa)
	livM-3	ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. (343 aa)
	livG-2	Leucine/isoleucine/valine transporter ATP-binding subunit. (254 aa)
	livF-3	Leucine/isoleucine/valine transporter ATP-binding subunit. (235 aa)
	livK-9	Ethanolamine utilization protein EutJ. (393 aa)
	AAW51_3864	ABC transporter substrate-binding protein. (384 aa)
	livF-4	ABC transporter ATP-binding protein. (237 aa)
	livG-3	ABC transporter. (260 aa)
	livM-4	ABC transporter ATP-binding protein; Belongs to the binding-protein-dependent transport system permease family. (362 aa)
	livH-4	ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. (309 aa)
	AAW51_4451	Extracellular ligand-binding receptor. (383 aa)
	AAW51_4670	Amino acid ABC transporter substrate-binding protein. (373 aa)
	AAW51_4672	Branched-chain amino acid transport system permease protein LivM; Belongs to the binding-protein-dependent transport system permease family. (380 aa)
	livH-5	ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. (320 aa)
	livF-5	ABC transporter ATP-binding protein. (250 aa)
	livG-4	Branched-chain amino acid ABC transporter substrate-binding protein. (254 aa)
	livK-10	ABC transporter permease. (401 aa)
	AAW51_4801	Long-chain fatty acid--CoA ligase; ACSL. (648 aa)
	livG-5	ABC transporter. (293 aa)
	livH-6	ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. (309 aa)
	livM-5	ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. (354 aa)
	livK-11	ABC transporter permease. (441 aa)
	livF-6	Branched-chain amino acid ABC transporter ATP-binding protein. (280 aa)
	AAW51_4807	Hypothetical protein. (95 aa)
	paaK	AMP-dependent synthetase. (435 aa)

Your Current Organism:

Polyangium brachysporum

NCBI taxonomy Id: 413882
Other names: ATCC 53080, DSM 7029, NBRC 100090, [. brachysporum, [Polyangium] brachysporum, strain K481-B101

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AAW51_1540	AAW51_4672	AAW51_1540	AAW51_4672	ABC transporter permease.	Branched-chain amino acid transport system permease protein LivM; Belongs to the binding-protein-dependent transport system permease family.	0.606
AAW51_1540	livF	AAW51_1540	AAW51_0484	ABC transporter permease.	ABC transporter ATP-binding protein.	0.526
AAW51_1540	livF-2	AAW51_1540	AAW51_2604	ABC transporter permease.	Mannosyltransferase.	0.579
AAW51_1540	livF-3	AAW51_1540	AAW51_3609	ABC transporter permease.	Leucine/isoleucine/valine transporter ATP-binding subunit.	0.625
AAW51_1540	livF-4	AAW51_1540	AAW51_3886	ABC transporter permease.	ABC transporter ATP-binding protein.	0.621
AAW51_1540	livF-5	AAW51_1540	AAW51_4674	ABC transporter permease.	ABC transporter ATP-binding protein.	0.520
AAW51_1540	livF-6	AAW51_1540	AAW51_4806	ABC transporter permease.	Branched-chain amino acid ABC transporter ATP-binding protein.	0.573
AAW51_1540	livG	AAW51_1540	AAW51_2603	ABC transporter permease.	Branched-chain amino acid ABC transporter substrate-binding protein.	0.579
AAW51_1540	livG-2	AAW51_1540	AAW51_3608	ABC transporter permease.	Leucine/isoleucine/valine transporter ATP-binding subunit.	0.651
AAW51_1540	livG-3	AAW51_1540	AAW51_3887	ABC transporter permease.	ABC transporter.	0.626
AAW51_1540	livG-4	AAW51_1540	AAW51_4675	ABC transporter permease.	Branched-chain amino acid ABC transporter substrate-binding protein.	0.522
AAW51_1540	livG-5	AAW51_1540	AAW51_4802	ABC transporter permease.	ABC transporter.	0.626
AAW51_1540	livH	AAW51_1540	AAW51_0482	ABC transporter permease.	ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.	0.719
AAW51_1540	livH-2	AAW51_1540	AAW51_2601	ABC transporter permease.	ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.	0.658
AAW51_1540	livH-3	AAW51_1540	AAW51_3606	ABC transporter permease.	ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.	0.720
AAW51_1540	livH-4	AAW51_1540	AAW51_3889	ABC transporter permease.	ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.	0.726
AAW51_1540	livH-5	AAW51_1540	AAW51_4673	ABC transporter permease.	ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.	0.605
AAW51_1540	livH-6	AAW51_1540	AAW51_4803	ABC transporter permease.	ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.	0.643
AAW51_1540	livK-7	AAW51_1540	AAW51_2810	ABC transporter permease.	ABC transporter substrate-binding protein.	0.538
AAW51_1540	livK-8	AAW51_1540	AAW51_3103	ABC transporter permease.	Branched-chain amino acid ABC transporter substrate-binding protein.	0.542