(16 nodes) Branched-chain amino acid transport, and Periplasmic binding protein domain network (Polyangium brachysporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	livK	Branched-chain amino acid transport system substrate-binding protein. (398 aa)
	livK-2	Amino acid ABC transporter substrate-binding protein. (404 aa)
	livH	ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. (289 aa)
	livM	ABC transporter; Belongs to the binding-protein-dependent transport system permease family. (660 aa)
	livF	ABC transporter ATP-binding protein. (240 aa)
	livK-4	ABC transporter substrate-binding protein. (379 aa)
	livK-7	ABC transporter substrate-binding protein. (382 aa)
	livH-3	ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. (276 aa)
	livM-3	ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. (343 aa)
	livG-2	Leucine/isoleucine/valine transporter ATP-binding subunit. (254 aa)
	livF-3	Leucine/isoleucine/valine transporter ATP-binding subunit. (235 aa)
	livK-9	Ethanolamine utilization protein EutJ. (393 aa)
	livF-4	ABC transporter ATP-binding protein. (237 aa)
	livG-3	ABC transporter. (260 aa)
	livM-4	ABC transporter ATP-binding protein; Belongs to the binding-protein-dependent transport system permease family. (362 aa)
	livH-4	ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. (309 aa)

Your Current Organism:

Polyangium brachysporum

NCBI taxonomy Id: 413882
Other names: ATCC 53080, DSM 7029, NBRC 100090, [. brachysporum, [Polyangium] brachysporum, strain K481-B101

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
livF	livG-2	AAW51_0484	AAW51_3608	ABC transporter ATP-binding protein.	Leucine/isoleucine/valine transporter ATP-binding subunit.	0.551
livF	livG-3	AAW51_0484	AAW51_3887	ABC transporter ATP-binding protein.	ABC transporter.	0.563
livF	livH	AAW51_0484	AAW51_0482	ABC transporter ATP-binding protein.	ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.	0.959
livF	livH-3	AAW51_0484	AAW51_3606	ABC transporter ATP-binding protein.	ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.	0.838
livF	livH-4	AAW51_0484	AAW51_3889	ABC transporter ATP-binding protein.	ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.	0.847
livF	livK	AAW51_0484	AAW51_0479	ABC transporter ATP-binding protein.	Branched-chain amino acid transport system substrate-binding protein.	0.874
livF	livK-2	AAW51_0484	AAW51_0481	ABC transporter ATP-binding protein.	Amino acid ABC transporter substrate-binding protein.	0.915
livF	livK-4	AAW51_0484	AAW51_1550	ABC transporter ATP-binding protein.	ABC transporter substrate-binding protein.	0.826
livF	livK-7	AAW51_0484	AAW51_2810	ABC transporter ATP-binding protein.	ABC transporter substrate-binding protein.	0.825
livF	livK-9	AAW51_0484	AAW51_3610	ABC transporter ATP-binding protein.	Ethanolamine utilization protein EutJ.	0.804
livF	livM	AAW51_0484	AAW51_0483	ABC transporter ATP-binding protein.	ABC transporter; Belongs to the binding-protein-dependent transport system permease family.	0.970
livF	livM-3	AAW51_0484	AAW51_3607	ABC transporter ATP-binding protein.	ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.	0.938
livF	livM-4	AAW51_0484	AAW51_3888	ABC transporter ATP-binding protein.	ABC transporter ATP-binding protein; Belongs to the binding-protein-dependent transport system permease family.	0.919
livF-3	livG-2	AAW51_3609	AAW51_3608	Leucine/isoleucine/valine transporter ATP-binding subunit.	Leucine/isoleucine/valine transporter ATP-binding subunit.	0.899
livF-3	livG-3	AAW51_3609	AAW51_3887	Leucine/isoleucine/valine transporter ATP-binding subunit.	ABC transporter.	0.574
livF-3	livH	AAW51_3609	AAW51_0482	Leucine/isoleucine/valine transporter ATP-binding subunit.	ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.	0.847
livF-3	livH-3	AAW51_3609	AAW51_3606	Leucine/isoleucine/valine transporter ATP-binding subunit.	ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.	0.961
livF-3	livH-4	AAW51_3609	AAW51_3889	Leucine/isoleucine/valine transporter ATP-binding subunit.	ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.	0.847
livF-3	livK	AAW51_3609	AAW51_0479	Leucine/isoleucine/valine transporter ATP-binding subunit.	Branched-chain amino acid transport system substrate-binding protein.	0.788
livF-3	livK-2	AAW51_3609	AAW51_0481	Leucine/isoleucine/valine transporter ATP-binding subunit.	Amino acid ABC transporter substrate-binding protein.	0.759