(53 nodes) Short-chain dehydrogenase/reductase SDR network (Polyangium brachysporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AAW51_0047	Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (339 aa)
	AAW51_0170	Sorbitol dehydrogenase. (265 aa)
	AAW51_0443	Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (310 aa)
	AAW51_0605	Short-chain dehydrogenase/reductase SDR. (253 aa)
	atuG	Citronellol/citronellal dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (294 aa)
	AAW51_0737	Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (292 aa)
	AAW51_0790	Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (323 aa)
	AAW51_0876	3-hydroxybutyrate dehydrogenase. (260 aa)
	AAW51_1162	Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (338 aa)
	AAW51_1320	Short-chain dehydrogenase. (334 aa)
	AAW51_1653	Pteridine reductase; PTR1. (233 aa)
	AAW51_1780	Short-chain dehydrogenase. (260 aa)
	AAW51_1943	3-hydroxy-2-methylbutyryl-CoA dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (252 aa)
	AAW51_2380	Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (278 aa)
	AAW51_2417	Dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (248 aa)
	AAW51_2431	3-hydroxybutyrate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (257 aa)
	AAW51_2515	Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (239 aa)
	idnO	Gluconate 5-dehydrogenase. (261 aa)
	AAW51_2617	Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (303 aa)
	fabI	Short-chain dehydrogenase. (260 aa)
	AAW51_2677	Oxidoreductase. (283 aa)
	fabG	Short-chain dehydrogenase. (252 aa)
	AAW51_2798	Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (301 aa)
	AAW51_2865	Short-chain dehydrogenase. (287 aa)
	AAW51_2903	3-ketoacyl-ACP reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (245 aa)
	AAW51_2914	Oxidoreductase. (303 aa)
	fabI-2	enoyl-ACP reductase. (261 aa)
	gdh	Sugar dehydrogenase. (255 aa)
	AAW51_3087	Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (329 aa)
	AAW51_3356	Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (330 aa)
	fabG-2	3-oxoacyl-ACP reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family. (249 aa)
	AAW51_3406	Short-chain dehydrogenase. (251 aa)
	idnO-2	Gluconate 5-dehydrogenase. (257 aa)
	AAW51_3605	Short-chain dehydrogenase. (253 aa)
	fabG-3	3-ketoacyl-ACP reductase. (245 aa)
	fabG-4	3-oxoacyl-ACP reductase. (259 aa)
	AAW51_3915	Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (244 aa)
	AAW51_4102	Dehydrogenase. (246 aa)
	AAW51_4145	Short-chain dehydrogenase. (253 aa)
	AAW51_4458	Short-chain dehydrogenase. (249 aa)
	fabG-5	3-ketoacyl-ACP reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family. (249 aa)
	AAW51_4697	Short-chain dehydrogenase. (222 aa)
	AAW51_4734	Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (252 aa)
	AAW51_4847	Short-chain dehydrogenase. (255 aa)
	AAW51_5053	Oxidoreductase. (329 aa)
	AAW51_5097	Oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (264 aa)
	AAW51_5114	Short-chain dehydrogenase. (254 aa)
	AAW51_5133	Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (253 aa)
	AAW51_5151	Short-chain dehydrogenase. (249 aa)
	AAW51_5213	3-oxoacyl-[acyl-carrier protein] reductase. (251 aa)
	AAW51_5482	Sugar dehydrogenase. (250 aa)
	AAW51_5498	Short-chain dehydrogenase. (200 aa)
	AAW51_5546	Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (258 aa)

Your Current Organism:

Polyangium brachysporum

NCBI taxonomy Id: 413882
Other names: ATCC 53080, DSM 7029, NBRC 100090, [. brachysporum, [Polyangium] brachysporum, strain K481-B101

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AAW51_0047	AAW51_0605	AAW51_0047	AAW51_0605	Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Short-chain dehydrogenase/reductase SDR.	0.476
AAW51_0170	AAW51_0605	AAW51_0170	AAW51_0605	Sorbitol dehydrogenase.	Short-chain dehydrogenase/reductase SDR.	0.713
AAW51_0170	AAW51_0790	AAW51_0170	AAW51_0790	Sorbitol dehydrogenase.	Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.589
AAW51_0170	AAW51_1653	AAW51_0170	AAW51_1653	Sorbitol dehydrogenase.	Pteridine reductase; PTR1.	0.667
AAW51_0170	fabG-4	AAW51_0170	AAW51_3818	Sorbitol dehydrogenase.	3-oxoacyl-ACP reductase.	0.526
AAW51_0443	AAW51_2380	AAW51_0443	AAW51_2380	Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.540
AAW51_0443	AAW51_2914	AAW51_0443	AAW51_2914	Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Oxidoreductase.	0.431
AAW51_0443	AAW51_5133	AAW51_0443	AAW51_5133	Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.557
AAW51_0443	AAW51_5213	AAW51_0443	AAW51_5213	Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	3-oxoacyl-[acyl-carrier protein] reductase.	0.509
AAW51_0605	AAW51_0047	AAW51_0605	AAW51_0047	Short-chain dehydrogenase/reductase SDR.	Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.476
AAW51_0605	AAW51_0170	AAW51_0605	AAW51_0170	Short-chain dehydrogenase/reductase SDR.	Sorbitol dehydrogenase.	0.713
AAW51_0605	AAW51_1162	AAW51_0605	AAW51_1162	Short-chain dehydrogenase/reductase SDR.	Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.548
AAW51_0605	AAW51_1653	AAW51_0605	AAW51_1653	Short-chain dehydrogenase/reductase SDR.	Pteridine reductase; PTR1.	0.676
AAW51_0605	AAW51_2903	AAW51_0605	AAW51_2903	Short-chain dehydrogenase/reductase SDR.	3-ketoacyl-ACP reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.692
AAW51_0605	AAW51_3406	AAW51_0605	AAW51_3406	Short-chain dehydrogenase/reductase SDR.	Short-chain dehydrogenase.	0.444
AAW51_0605	AAW51_4458	AAW51_0605	AAW51_4458	Short-chain dehydrogenase/reductase SDR.	Short-chain dehydrogenase.	0.719
AAW51_0605	AAW51_4734	AAW51_0605	AAW51_4734	Short-chain dehydrogenase/reductase SDR.	Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.698
AAW51_0605	AAW51_5151	AAW51_0605	AAW51_5151	Short-chain dehydrogenase/reductase SDR.	Short-chain dehydrogenase.	0.755
AAW51_0605	AAW51_5213	AAW51_0605	AAW51_5213	Short-chain dehydrogenase/reductase SDR.	3-oxoacyl-[acyl-carrier protein] reductase.	0.729
AAW51_0605	AAW51_5482	AAW51_0605	AAW51_5482	Short-chain dehydrogenase/reductase SDR.	Sugar dehydrogenase.	0.642