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CBO0482 CBO0482 CBO3573 CBO3573 CBO3550 CBO3550 CBO3421 CBO3421 CBO3333 CBO3333 CBO3302 CBO3302 etfB2 etfB2 etfA2 etfA2 pyrK pyrK rbr3A rbr3A CBO3198 CBO3198 CBO3197 CBO3197 CBO3192 CBO3192 rub rub CBO2842 CBO2842 CBO2778 CBO2778 nifJ2 nifJ2 fprA1 fprA1 CBO2603 CBO2603 CBO2547 CBO2547 CBO2546 CBO2546 prdC4 prdC4 prdC3 prdC3 prdC2 prdC2 CBO2481 CBO2481 prdC1 prdC1 CBO2465 CBO2465 CBO2270 CBO2270 CBO2215 CBO2215 CBO2214 CBO2214 etfB1 etfB1 etfA1 etfA1 fldZ fldZ CBO1955 CBO1955 aorA aorA hymA hymA hymB hymB hymC hymC hupS hupS hupL hupL CBO1832 CBO1832 CBO1830 CBO1830 CBO1829 CBO1829 CBO1528 CBO1528 CBO1505 CBO1505 CBO1333 CBO1333 rbr rbr nifJ1 nifJ1 norV-2 norV-2 CBO1022 CBO1022 CBO1020 CBO1020 etfB-2 etfB-2 etfB etfB CBO0996 CBO0996 CBO0927 CBO0927 CBO0853 CBO0853 norV norV CBO0432 CBO0432 rnfB rnfB rnfA rnfA rnfE rnfE rnfG rnfG rnfD rnfD rnfC rnfC CBO0089 CBO0089 fer fer
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CBO0482Similar to Bacillus halodurans hypothetical protein Bh1562 SWALL:Q9KCK9 (EMBL:AP001512) (268 aa) fasta scores: E(): 4.7e-46, 45.14 38d in 268 aa. (269 aa)
CBO3573Putative iron-sulfur flavoprotein. (211 aa)
CBO3550Iron-only hydrogenase. (449 aa)
CBO3421Putative subunit of pyruvate:flavodoxin oxidoreductase. (176 aa)
CBO3333Desulfoferrodoxin. (124 aa)
CBO3302Putative iron-dependent hydrogenase. (498 aa)
etfB2Electron transfer flavoprotein beta-subunit. (264 aa)
etfA2Electron transfer flavoprotein alpha-subunit; N-terminal extension relative to homologues. (398 aa)
pyrKDihydroorotate dehydrogenase electron transfer subunit; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+). (251 aa)
rbr3APutative rubrerythrin. (181 aa)
CBO3198Electron transfer flavoprotein beta-subunit. (259 aa)
CBO3197Electron transfer flavoprotein alpha-subunit. (334 aa)
CBO3192Putative ferredoxin. (64 aa)
rubRubredoxin. (52 aa)
CBO2842Putative flavoprotein. (399 aa)
CBO2778Flavodoxin. (138 aa)
nifJ2Pyruvate-flavodoxin oxidoreductase; Also similar to CBO1192 (65.74 38d). (1192 aa)
fprA1Putative flavoprotein. (389 aa)
CBO2603Hypothetical protein; No significant database matches to the full length CDS. C-terminal region is similar to many proteins,including Lactobacillus plantarum hypothetical protein LP_0490 SWALL:Q88Z69 (EMBL:AL935253) (184 aa) fasta scores: E(): 0.011, 26.34 38d in 186 aa. Possible alternative translational start sites. (351 aa)
CBO2547Conserved hypothetical protein; Possible alternative translational start site; Also similar to the downstream CDS CBO2546 (34.9 id). (157 aa)
CBO2546Conserved hypothetical protein; Also similar to the upstream CDS CBO2547 (34.9 id). (222 aa)
prdC4Putative proline reductase (partial); Similar to the N-terminal region of Clostridium sticklandii proline reductase proprotein, two subunits PrdA SWALL:Q9Z4P6 (EMBL:AJ130879) (630 aa) fasta scores: E(): 1.9e-20, 53.47 38d in 144 aa. Possible gene remnant; was marked partial. (436 aa)
prdC3Putative proline reductase (partial); Similar to the N-terminal region of Clostridium sticklandii proline reductase proprotein, two subunits PrdA SWALL:Q9Z4P6 (EMBL:AJ130879) (630 aa) fasta scores: E(): 9.2e-15, 33.94 38d in 218 aa. Possible gene remnant; was marked partial. (434 aa)
prdC2Putative electron transferring subunit of proline reductase; Similar to the N-terminal region of Clostridium sticklandii electron transfer protein PrdC SWALL:Q9L4Q5 (EMBL:AJ130879) (402 aa) fasta scores: E(): 9.7e-61,48.77 38d in 367 aa. (372 aa)
CBO2481Hypothetical protein; No significant database matches. (58 aa)
prdC1Putative electron transferring subunit of proline reductase; Similar to the N-terminal region of Clostridium sticklandii electron transfer protein PrdC SWALL:Q9L4Q5 (EMBL:AJ130879) (402 aa) fasta scores: E(): 6e-59, 47.13 id in 367 aa. (372 aa)
CBO2465Hypothetical protein; No significant database matches. (56 aa)
CBO2270Hypothetical protein; N-terminus is similar to the N-terminal region of Clostridium tetani iron-sulfur flavoprotein CTC01006 SWALL:Q896J7 (EMBL:AE015939) (185 aa) fasta scores: E(): 2e-12, 44.18 38d in 129 aa. Weakly similar to the full length Escherichia coli putative NAD(P)H oxidoreductase b0901 SWALL:YCAK_ECOLI (SWALL:P43340) (196 aa) fasta scores: E(): 0.008, 22.34 38d in 188 aa. (193 aa)
CBO2215Conserved hypothetical protein. (216 aa)
CBO2214Conserved hypothetical protein. (175 aa)
etfB1Electron transfer flavoprotein beta-subunit. (261 aa)
etfA1Electron transfer flavoprotein alpha-subunit. (349 aa)
fldZCinnamate reductase; This enzyme was purified from C. sporogenes and its N-terminus sequenced (Dickert et al. 2000 Eur. J. Biochem. 267, 3874-3884. (665 aa)
CBO1955Putative NADPH-dependent FMN reductase. (208 aa)
aorATungsten-containing aldehyde ferredoxin oxidoreductase. (605 aa)
hymAPutative electron-transferring subunit of iron-only hydrogenase. (159 aa)
hymBPutative electron-transferring subunit of iron-only hydrogenase. (631 aa)
hymCPutative catalytic subunit of iron-only hydrogenase. (577 aa)
hupSHydrogenase small subunit. (290 aa)
hupLHydrogenase large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family. (471 aa)
CBO1832Putative hydrogenase; This CDS is also similar to CBO1830 (49.914 38d. in 579 aa overlap). (579 aa)
CBO1830Putative hydrogenase; This CDS is also similar to CBO1832 (49.914 38d. in 579 aa overlap). (574 aa)
CBO1829Conserved hypothetical protein; Similar to the C-terminal region of several oxidoreductases such as Eubacterium acidaminophilum HymA protein. (80 aa)
CBO1528Conserved hypothetical protein. (180 aa)
CBO1505Putative oxidoreductase. (521 aa)
CBO1333Putative oxidoreductase, NAD/FAD binding subunit. (408 aa)
rbrPutative rubrerythrin. (195 aa)
nifJ1Putative pyruvate-flavodoxin oxidoreductase; Also similar to CBO2760 (65.74 38d). (1172 aa)
norV-2Anaerobic nitric oxide reductase flavorubredoxin. (396 aa)
CBO1022Putative flavodoxin. (162 aa)
CBO1020Putative exported protein. (126 aa)
etfB-2Electron transfer flavoprotein alpha-subunit. (400 aa)
etfBElectron transfer flavoprotein beta-subunit. (262 aa)
CBO0996Putative rubrerythrin. (143 aa)
CBO0927Putative iron-sulfur flavoprotein. (247 aa)
CBO0853Putative iron-sulfur flavoprotein. (184 aa)
norVAnaerobic nitric oxide reductase flavorubredoxin. (410 aa)
CBO0432Putative pyridine nucleotide-disulphide oxidoreductase; Similar to Moorella thermoacetica formate dehydrogenase beta subunit fdhB SWALL:P77907 (EMBL:U73807) (707 aa) fasta scores: E(): 5.5e-36, 34.26 38d in 502 aa. (892 aa)
rnfBElectron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. (277 aa)
rnfAElectron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. (192 aa)
rnfEElectron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. (199 aa)
rnfGElectron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family. (223 aa)
rnfDElectron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family. (310 aa)
rnfCElectron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily. (439 aa)
CBO0089Ferredoxin; Similar to Thermotoga maritima ferredoxin Fdx or tm0927 SWALL:FER_THEMA (SWALL:P46797) (60 aa) fasta scores: E(): 0.00016, 38.98 38d in 59 aa, and to Clostridium perfringens ferredoxin Fer or cpe2511 SWALL:Q8XHH3 (EMBL:AP003194) (62 aa) fasta scores: E(): 3.4e-07, 45.76 38d in 59 aa. (63 aa)
ferFerredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (56 aa)
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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